General information for g11822.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Ubiquitin-conjugating enzyme E2 Q1.
Parent gene
- The parent gene g11822 is located on chr_1: 18586869..18588999 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11822 | g11822.t4 | TSS | g11822.t4 | 18584731 | 18584731 |
| chr_1 | g11822 | g11822.t4 | isoform | g11822.t4 | 18584928 | 18587917 |
| chr_1 | g11822 | g11822.t4 | exon | g11822.t4.exon1 | 18584928 | 18585464 |
| chr_1 | g11822 | g11822.t4 | exon | g11822.t4.exon2 | 18585537 | 18585657 |
| chr_1 | g11822 | g11822.t4 | exon | g11822.t4.exon3 | 18585720 | 18586058 |
| chr_1 | g11822 | g11822.t4 | cds | g11822.t4.CDS1 | 18585804 | 18586058 |
| chr_1 | g11822 | g11822.t4 | exon | g11822.t4.exon4 | 18586118 | 18586409 |
| chr_1 | g11822 | g11822.t4 | cds | g11822.t4.CDS2 | 18586118 | 18586409 |
| chr_1 | g11822 | g11822.t4 | exon | g11822.t4.exon5 | 18586495 | 18586643 |
| chr_1 | g11822 | g11822.t4 | cds | g11822.t4.CDS3 | 18586495 | 18586643 |
| chr_1 | g11822 | g11822.t4 | exon | g11822.t4.exon6 | 18586706 | 18586772 |
| chr_1 | g11822 | g11822.t4 | cds | g11822.t4.CDS4 | 18586706 | 18586772 |
| chr_1 | g11822 | g11822.t4 | exon | g11822.t4.exon7 | 18586838 | 18587917 |
| chr_1 | g11822 | g11822.t4 | cds | g11822.t4.CDS5 | 18586838 | 18586869 |
| chr_1 | g11822 | g11822.t4 | TTS | g11822.t4 | 18587952 | 18587952 |
Sequences
>g11822.t4 Gene=g11822 Length=2585
ATGGCATGTTTGAATAATTTAAAGTCAGAAATAAAGACACTAGAAAAGCTATTTCCTAAA
AGCCATGAAAGATTTGCTATAATAAACGCTAGTGTAGATGAATTAACGTGTCGATTTATT
ACAAAAAGTGGCAAAAAATTTGATATTCATGCAAATATTACGGTTTGTATTCCATATTTG
TTTTTTATTCATTGAAATAAAGATTTTTCTGCAATTATCTCAATTTCAAAAAAAGAAAAA
GATTCGTTTAAAAAAAAGTCATTGTTCTATTAAAAATAAGGACTATCTTCATGATTTTTT
ATAAAAATCACTTTTTAAGGAAAGTGTATTCAAAAATTATTAAAAAGCTCATTTTCGATC
AGTCGATGGCAATTTGATGCTTTCTCCTATTCAATTTAAAGTTATAAAAGAAAGAAAAAA
GTTCTTAATCATCTGGTATTTTTCTTCGTATAAACATGAATGAGAAATATATGAGACCAA
TTAGGACGTTTTATAAATTTTTTTGAAAAAGATAAATGTTTTCATTATAAAATATAAAAA
GGAGACATACCCTACCACTCCTCCGGTTTGGTTTGCTGATATTGAAGAACCTAATATAAC
GAATGCAATTCAATTACTTAGCAATACAAGTGGACTAGATAACCACGTTATTAATCAAGC
TAGAATATTATTAGGAGAATTGTGCACTATTCACTCCTGTCCTCTTCCGATTGAGGTTCA
TCAACTCAACACGTTCCATTCGATGCCCACTAGTTCAACTCACAATCATAGTTTGAACAA
TGGAAAAACTCCAGCAAAAAATCATCAAGACGAAATTGATACTGATCCAGAAGATCTAGA
AGATGCTGTTGGTGAAAGCGAAGATTCAGATGCTGAAGAAGATTTACCTCTGGAATTAGA
CGATGGACGCAGTGCCAGTAAAAAAGATGAAATGGAAGTAGAACATTTAGCGACATTGGA
GAGATTAAGACAAACACAGAGACAAGACTATTTAAGGGGTTCTGTATCGGGAAGCGTTCA
AGCAACTGATCGACTGATGAAAGAGTTGCGAGATATTTATCGCTCAGATTCTTTTAAAAG
GAATATTTATTCGATTGAATTAGTTAATGATTCAATATATGAGTGGAATATTCGGCTTAT
GTCCGTTGATCCAGATAGTCCTCTTCACAATGATCTGCTTATGCTTAAAGAAAAAGAAGG
AAAAGATAGCATTCTTTTGAATATCATATTTAAAGAAACTTATCCTTTTGAACCACCTTT
TGTTCGCGTTGTTCATCCAATTATATCAGGCGGATATGTTTTATTAGGCGGTGCAATTTG
CATGGAACTTTTGACGAAACAGGGGTGGAGCTCAGCTTACACAGTAGAAGCTCTGATAAT
GCAAATTTCAGCAACTTTAGTGAAAGGAAAGGCGCGTATTCAATTTGGGGCAACAAAGGG
TCAATATAGTTTGGCACGTGCACAGCAAAGCTTTAAGTCATTGGTCCAGATACATGAGAA
AAACGGATGGTTTACTCCTCCAAAAGAAGATGGATAAAATTGCAACGAACGAAAATTCAT
TCCCAAATAATTTTTTTTTACAATATAAATAAAAAACAGAAAAGAGAAACACACACAAAA
ATTCAAAAAAAGAATACAAGAAAAGTATAAGAATTTTAGTAAAGTATTAAAGTGATTGCC
CCATAAAATTTAAGTTTTACTATCTGTATGCATCAAATGGTTTTACATAATTTGAAAACA
AGAAAAAATCTATTGCTCTTTCGATTTGAATTTCAACAAAAACTTTTTTCAACTACCTAG
ATTTTAATACAATATGGGATTTATTCTGTTAGCTTTTTTCAATTAATTGCAAGAATTGTC
TATTTTAATGGCGATGAATAATAAATGATGAACCTTATGATCTACAATATTTTTAAATTA
ATTTTTTTTCTTGTAATTAAACACAAATATGATATTTAAAAAACTAAATTTTTAATTTAA
TTTCATTAATCAATAACTCTGTTTAAATACAATGAGGATAAACTTGTATGCATATAATAA
ATAATGTGAATGAAAGGAATCGTCATTTGGAGCCAAAAAATGGCACAAAGAAAAACATTG
GCTGTTGAATGGAAAAATAGCGTATTTTTGATAAAATTAGGGAACGAATACAACTAAAAA
ATACTGTACATAAAAATCCATTTTCCCTAAAAAAATTATGCATATATCATAGTAATTCGC
CAAACAAAAAATTTAATAAATTATAAAAAAAATTGGTTGGTTTTCATTTTTAAATAAATA
TCTAGGTAGTCTCAACATCTTATCATTAAAAAAATTTACTCATAAGTTATCAATATAAAG
AAAATAAAAAAAGCAGAATCCATTTTTTTGGTAAAATTTGGATCTAGTTTTTGATTTTTT
CTAAGATCTTATTTGCATAGAAATGGTATCATATTACATGATGATTGATGTTTATAATGA
TCAAAATAAATTTTTCTAATTAGCGCATTATTTTGAGAAATAAAACAATCTTGTAAAAGA
AATTTGAGTAAATATTATATTACAAACCTAACTATAATTATTAATTAACTAAATCTGTAT
AAATG
>g11822.t4 Gene=g11822 Length=264
MPTSSTHNHSLNNGKTPAKNHQDEIDTDPEDLEDAVGESEDSDAEEDLPLELDDGRSASK
KDEMEVEHLATLERLRQTQRQDYLRGSVSGSVQATDRLMKELRDIYRSDSFKRNIYSIEL
VNDSIYEWNIRLMSVDPDSPLHNDLLMLKEKEGKDSILLNIIFKETYPFEPPFVRVVHPI
ISGGYVLLGGAICMELLTKQGWSSAYTVEALIMQISATLVKGKARIQFGATKGQYSLARA
QQSFKSLVQIHEKNGWFTPPKEDG
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g11822.t4 | CDD | cd00195 | UBCc | 95 | 251 | 6.95235E-30 |
| 5 | g11822.t4 | Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 88 | 256 | 1.2E-58 |
| 8 | g11822.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 64 | - |
| 9 | g11822.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 18 | - |
| 10 | g11822.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 27 | 50 | - |
| 2 | g11822.t4 | PANTHER | PTHR24068:SF56 | UBIQUITIN-CONJUGATING ENZYME E2 Q1 | 36 | 261 | 3.7E-100 |
| 3 | g11822.t4 | PANTHER | PTHR24068 | UBIQUITIN-CONJUGATING ENZYME E2 | 36 | 261 | 3.7E-100 |
| 1 | g11822.t4 | Pfam | PF00179 | Ubiquitin-conjugating enzyme | 98 | 222 | 3.7E-9 |
| 11 | g11822.t4 | ProSiteProfiles | PS50127 | Ubiquitin-conjugating enzymes family profile. | 96 | 219 | 14.147 |
| 7 | g11822.t4 | SMART | SM00212 | ubc_7 | 96 | 257 | 3.4E-7 |
| 4 | g11822.t4 | SUPERFAMILY | SSF54495 | UBC-like | 91 | 250 | 3.63E-34 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
