General information for g11822.t9
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Ubiquitin-conjugating enzyme E2 Q1.
Parent gene
- The parent gene g11822 is located on chr_1: 18586869..18588999 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11822 | g11822.t9 | TSS | g11822.t9 | 18585462 | 18585462 |
| chr_1 | g11822 | g11822.t9 | isoform | g11822.t9 | 18586117 | 18587351 |
| chr_1 | g11822 | g11822.t9 | exon | g11822.t9.exon1 | 18586117 | 18586409 |
| chr_1 | g11822 | g11822.t9 | cds | g11822.t9.CDS1 | 18586157 | 18586409 |
| chr_1 | g11822 | g11822.t9 | exon | g11822.t9.exon2 | 18586493 | 18586643 |
| chr_1 | g11822 | g11822.t9 | cds | g11822.t9.CDS2 | 18586493 | 18586512 |
| chr_1 | g11822 | g11822.t9 | exon | g11822.t9.exon3 | 18586706 | 18586772 |
| chr_1 | g11822 | g11822.t9 | exon | g11822.t9.exon4 | 18586838 | 18587351 |
| chr_1 | g11822 | g11822.t9 | TTS | g11822.t9 | 18587952 | 18587952 |
Sequences
>g11822.t9 Gene=g11822 Length=1025
GGGTTCTGTATCGGGAAGCGTTCAAGCAACTGATCGACTGATGAAAGAGTTGCGAGATAT
TTATCGCTCAGATTCTTTTAAAAGGAATATTTATTCGATTGAATTAGTTAATGATTCAAT
ATATGAGTGGAATATTCGGCTTATGTCCGTTGATCCAGATAGTCCTCTTCACAATGATCT
GCTTATGCTTAAAGAAAAAGAAGGAAAAGATAGCATTCTTTTGAATATCATATTTAAAGA
AACTTATCCTTTTGAACCACCTTTTGTTCGCGTTGTTCATCCAATTATATCAGAGGCGGA
TATGTTTTATTAGGCGGTGCAATTTGCATGGAACTTTTGACGAAACAGGGGTGGAGCTCA
GCTTACACAGTAGAAGCTCTGATAATGCAAATTTCAGCAACTTTAGTGAAAGGAAAGGCG
CGTATTCAATTTGGGGCAACAAAGGGTCAATATAGTTTGGCACGTGCACAGCAAAGCTTT
AAGTCATTGGTCCAGATACATGAGAAAAACGGATGGTTTACTCCTCCAAAAGAAGATGGA
TAAAATTGCAACGAACGAAAATTCATTCCCAAATAATTTTTTTTTACAATATAAATAAAA
AACAGAAAAGAGAAACACACACAAAAATTCAAAAAAAGAATACAAGAAAAGTATAAGAAT
TTTAGTAAAGTATTAAAGTGATTGCCCCATAAAATTTAAGTTTTACTATCTGTATGCATC
AAATGGTTTTACATAATTTGAAAACAAGAAAAAATCTATTGCTCTTTCGATTTGAATTTC
AACAAAAACTTTTTTCAACTACCTAGATTTTAATACAATATGGGATTTATTCTGTTAGCT
TTTTTCAATTAATTGCAAGAATTGTCTATTTTAATGGCGATGAATAATAAATGATGAACC
TTATGATCTACAATATTTTTAAATTAATTTTTTTTCTTGTAATTAAACACAAATATGATA
TTTAAAAAACTAAATTTTTAATTTAATTTCATTAATCAATAACTCTGTTTAAATACAATG
AGGAT
>g11822.t9 Gene=g11822 Length=90
MKELRDIYRSDSFKRNIYSIELVNDSIYEWNIRLMSVDPDSPLHNDLLMLKEKEGKDSIL
LNIIFKETYPFEPPFVRVVHPIISEADMFY
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g11822.t9 | Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 1 | 88 | 0 |
| 1 | g11822.t9 | PANTHER | PTHR24068:SF56 | UBIQUITIN-CONJUGATING ENZYME E2 Q1 | 1 | 84 | 0 |
| 2 | g11822.t9 | PANTHER | PTHR24068 | UBIQUITIN-CONJUGATING ENZYME E2 | 1 | 84 | 0 |
| 3 | g11822.t9 | SUPERFAMILY | SSF54495 | UBC-like | 1 | 83 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
