General information for g1184.t20
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Protein similar.
Parent gene
- The parent gene g1184 is located on chr_3: 8583920..8590729 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1184 | g1184.t20 | isoform | g1184.t20 | 8583541 | 8590729 |
| chr_3 | g1184 | g1184.t20 | exon | g1184.t20.exon1 | 8583541 | 8583553 |
| chr_3 | g1184 | g1184.t20 | cds | g1184.t20.CDS1 | 8583542 | 8583553 |
| chr_3 | g1184 | g1184.t20 | exon | g1184.t20.exon2 | 8583625 | 8583845 |
| chr_3 | g1184 | g1184.t20 | cds | g1184.t20.CDS2 | 8583625 | 8583845 |
| chr_3 | g1184 | g1184.t20 | exon | g1184.t20.exon3 | 8583920 | 8584107 |
| chr_3 | g1184 | g1184.t20 | cds | g1184.t20.CDS3 | 8583920 | 8584107 |
| chr_3 | g1184 | g1184.t20 | exon | g1184.t20.exon4 | 8590275 | 8590729 |
| chr_3 | g1184 | g1184.t20 | cds | g1184.t20.CDS4 | 8590275 | 8590375 |
| chr_3 | g1184 | g1184.t20 | TSS | g1184.t20 | 8590731 | 8590731 |
| chr_3 | g1184 | g1184.t20 | TTS | g1184.t20 | NA | NA |
Sequences
>g1184.t20 Gene=g1184 Length=877
GTGTTACCTTTACTTATTTAAAACGCCATTGTAAAAAAATTGTGCTGATAAAAATATTCA
AAATAAATAATTACACTCACTAAATGAGTGTCGTAAACTAGTGAAAAACGTTATTGACAT
AGTGAAAAACTAAAAAATCATTAGAGCATATGTTTGGCAGTGACCAAAAGTGCTTAAAAC
TGATTTGAAAGTGTTCAGCTAATCATATTATTGTTCGGACTATAAAAAAGGAATTTTTAA
ATATTTTGATTGTGTCAATCTGTCGTCTCAAATTCTTGATTAGTAACAGATAAAGACCGA
GTGATTGTTTCTTAAACTAATTTGAATGAGAACATCAGTTTATGAGTGCTGAAAATGTGT
AAAATAAATCGAAATTCAGAACTTGAATCAACAACGAATAGTCTGAAGGCTATCTCTGTA
ACCATCCAAAAGCCAAAGGAAAAAGAGAAGAGAAGGAACAATGAAAAACGCAAAGAAAAG
TCTCGCGATGCAGCAAGATGCCGTCGTTCGAGAGAAACAGAGATATTTACGGAACTTGCA
AATTCACTTCCAATAAAACAAGATGAAATTGATCATCTTGACAAAGCTTCTGTTATGCGT
CTTTCCATTTCTTATCTCAAGATTCGTAATATGCTTGAGTTGTTTCCAAAAATTAAAAAT
TTGGATATTCCCGTTGCTGAGCTCGAAAATGGTGATGAAACAGATGAGGATGTTAAGGAT
GTCAAGATTGACGTTTTGAGAAAAATTGTTGAGGATGAGAAATTTGCTCTAAAAGCACTC
GATGGATTCTTGCTTGTGCTCAATGCTGAAGGCGATATTACATATGTATCGCAAAACATT
GCAGAATACCTGGGTCTAGCAAAAATTGATTTATTGG
>g1184.t20 Gene=g1184 Length=174
MCKINRNSELESTTNSLKAISVTIQKPKEKEKRRNNEKRKEKSRDAARCRRSRETEIFTE
LANSLPIKQDEIDHLDKASVMRLSISYLKIRNMLELFPKIKNLDIPVAELENGDETDEDV
KDVKIDVLRKIVEDEKFALKALDGFLLVLNAEGDITYVSQNIAEYLGLAKIDLL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 10 | g1184.t20 | CDD | cd00130 | PAS | 142 | 174 | 0.00114947 |
| 7 | g1184.t20 | Gene3D | G3DSA:3.30.450.20 | - | 130 | 174 | 3.9E-10 |
| 6 | g1184.t20 | MobiDBLite | mobidb-lite | consensus disorder prediction | 18 | 49 | - |
| 5 | g1184.t20 | MobiDBLite | mobidb-lite | consensus disorder prediction | 24 | 49 | - |
| 1 | g1184.t20 | PANTHER | PTHR23043 | HYPOXIA-INDUCIBLE FACTOR 1 ALPHA | 28 | 173 | 9.3E-51 |
| 2 | g1184.t20 | PANTHER | PTHR23043:SF17 | PROTEIN SIMILAR | 28 | 173 | 9.3E-51 |
| 8 | g1184.t20 | ProSiteProfiles | PS50888 | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 38 | 91 | 12.157 |
| 9 | g1184.t20 | ProSiteProfiles | PS50112 | PAS repeat profile. | 138 | 174 | 11.069 |
| 4 | g1184.t20 | SMART | SM00353 | finulus | 44 | 96 | 5.5E-4 |
| 3 | g1184.t20 | SUPERFAMILY | SSF47459 | HLH, helix-loop-helix DNA-binding domain | 35 | 90 | 5.07E-7 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0046983 | protein dimerization activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
