General information for g1184.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g1184 is located on chr_3: 8583920..8590729 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1184 | g1184.t6 | TTS | g1184.t6 | 8559003 | 8559003 |
| chr_3 | g1184 | g1184.t6 | isoform | g1184.t6 | 8559900 | 8568156 |
| chr_3 | g1184 | g1184.t6 | exon | g1184.t6.exon1 | 8559900 | 8559919 |
| chr_3 | g1184 | g1184.t6 | cds | g1184.t6.CDS1 | 8559900 | 8559919 |
| chr_3 | g1184 | g1184.t6 | exon | g1184.t6.exon2 | 8559985 | 8560510 |
| chr_3 | g1184 | g1184.t6 | cds | g1184.t6.CDS2 | 8559985 | 8560510 |
| chr_3 | g1184 | g1184.t6 | exon | g1184.t6.exon3 | 8562668 | 8562939 |
| chr_3 | g1184 | g1184.t6 | cds | g1184.t6.CDS3 | 8562668 | 8562939 |
| chr_3 | g1184 | g1184.t6 | exon | g1184.t6.exon4 | 8565164 | 8565819 |
| chr_3 | g1184 | g1184.t6 | cds | g1184.t6.CDS4 | 8565164 | 8565212 |
| chr_3 | g1184 | g1184.t6 | exon | g1184.t6.exon5 | 8567950 | 8568156 |
| chr_3 | g1184 | g1184.t6 | TSS | g1184.t6 | 8568222 | 8568222 |
Sequences
>g1184.t6 Gene=g1184 Length=1681
AAAGAAAAAAAAGAAAGAGGAAGAAATAAGAAATTATATATCACAATTTAGAGAAAGAAA
ATAAAGTTTATATATCATACATTTAATAGCAAAGAAAGAAGACTTTGATATATTTTGTTT
GTTGAAGAAAGTGAAGCAAAAAAAATATTTGATAAGATATTTTAAAATAAAACAGGGAAA
TTAACAAATAACTTTGTATTTTGTGAGTGGAATAGAAAATGAACATGAAATTTATTCATG
TGCTCAACTCGAGGCACAACAGCAAGAATTGTCAAAAGCAATTGAGACAACAACAGCAGT
AGTTGAGACACAAAGTGACATAAAAGTGATTAAAAAGGACAATATTGTGCTCGGTATAAG
TGATTTGAAACAACAGCAACAGAAAAAATTATCAACTGCCGAAGCAAAAGGCATTAGTGG
AACAATTACTAATAATAATATTAAAAGTGCTGCCAATAATAAACCATTAACGATTGCTGA
CAAAAAGGAAAACAATAGCGATAACAAGAACACAAGTGTTGGACAATCATTGGTTACAAT
CAATCCAATAAATACTATTAAAGTTAATAACTGTGAAATTATAAATCGTCGTCCACACTC
AGTTACGGCTGCAATTTTCGCACAGTCGACAGTTTTAAAATCACAAGCAATAGCTACATC
TAATGCTATAATAGCATCTGCTGCTCAAATATCCAGGAAAACTAAAAAACAAACAGCAAC
AGCAGGAATAAAAGTATTTCGTCCAACACAGCAAGTAGTAGCAAACGCCGCTACAAGCGT
TACATCAACAATTTTTGCACCACGTACGAAGGATATGAATAAAGGATACTTGATGTTCGC
AGAAGACGACACAGGACTAACAATGCTGAAAGATGAGCCGGATGATTTAACACATTTGGC
ACCAACTGCCGGCGACGCATGCATCTCGCTTGATGAATCTGCTCCTTTCTTTGATATGTT
TGATGACTTCATGATACCCGATAATTATAATACATTGTTAACAGACGATTTGGACAGTCA
ATGCAGTAAAACAACAACAACGAGTAGTTCTAGTAATGATCCATTTATTAACTATAGAGA
TGAGTCAAGTGATGTTAGCAATTCTCCTCACTTGCTTTCACCGGGTTTGTCAAAGAGTCC
TGGTGCAAATAGTAGTATACCGTCTTTATGCAGTCCTGGCTCTCTACCAGAAGATGAGCT
TGCATTTATGACATTAAATATGGATGATGATTTGGATATGTCTATGCGTGCCCCTTATAT
TTCAATGAGCGAATCAGCTGAGCTTCCATTACTAATCGCAGAAGATCTTATGTGGGGTGC
TGCACCTGACATAAAACAATCGCTAACAATTAATAGAAAAATGGAAATTCCAATTAATGT
AGAGCAAGAACAGCAAATAAGCCAACAACAACATACTGAAAGTCCTAACAAACAGCAGCA
ACAACAAATTACAACGCAAAATGTACTTGCAAAGAATGCAATGGATTCGAGTTTAGCATC
ATTGCTTTGTAGCCAATTATTGCAGCAACAGCTACTAAATCAGCAACAAACAGAACAACA
AATTATCCTAAGTAAAAATCCAGAAATTAAAATCAAAATTTTGGATAACTTAATTGATGC
GACTAACGAGCTTGATCACAACACCACCAACACTAAAAGCGCTTCAAATGTTGAATGCAC
G
>g1184.t6 Gene=g1184 Length=289
MNKGYLMFAEDDTGLTMLKDEPDDLTHLAPTAGDACISLDESAPFFDMFDDFMIPDNYNT
LLTDDLDSQCSKTTTTSSSSNDPFINYRDESSDVSNSPHLLSPGLSKSPGANSSIPSLCS
PGSLPEDELAFMTLNMDDDLDMSMRAPYISMSESAELPLLIAEDLMWGAAPDIKQSLTIN
RKMEIPINVEQEQQISQQQHTESPNKQQQQQITTQNVLAKNAMDSSLASLLCSQLLQQQL
LNQQQTEQQIILSKNPEIKIKILDNLIDATNELDHNTTNTKSASNVECT
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g1184.t6 | MobiDBLite | mobidb-lite | consensus disorder prediction | 192 | 213 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
