General information for g1184.t7
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g1184 is located on chr_3: 8583920..8590729 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1184 | g1184.t7 | TTS | g1184.t7 | 8559003 | 8559003 |
| chr_3 | g1184 | g1184.t7 | isoform | g1184.t7 | 8559985 | 8568156 |
| chr_3 | g1184 | g1184.t7 | exon | g1184.t7.exon1 | 8559985 | 8560510 |
| chr_3 | g1184 | g1184.t7 | cds | g1184.t7.CDS1 | 8559986 | 8560510 |
| chr_3 | g1184 | g1184.t7 | exon | g1184.t7.exon2 | 8562668 | 8562939 |
| chr_3 | g1184 | g1184.t7 | cds | g1184.t7.CDS2 | 8562668 | 8562939 |
| chr_3 | g1184 | g1184.t7 | exon | g1184.t7.exon3 | 8565164 | 8565868 |
| chr_3 | g1184 | g1184.t7 | cds | g1184.t7.CDS3 | 8565164 | 8565212 |
| chr_3 | g1184 | g1184.t7 | exon | g1184.t7.exon4 | 8567950 | 8568156 |
| chr_3 | g1184 | g1184.t7 | TSS | g1184.t7 | 8568222 | 8568222 |
Sequences
>g1184.t7 Gene=g1184 Length=1710
AAAGAAAAAAAAGAAAGAGGAAGAAATAAGAAATTATATATCACAATTTAGAGAAAGAAA
ATAAAGTTTATATATCATACATTTAATAGCAAAGAAAGAAGACTTTGATATATTTTGTTT
GTTGAAGAAAGTGAAGCAAAAAAAATATTTGATAAGATATTTTAAAATAAAACAGGGAAA
TTAACAAATAACTTTGTATTTTGTGAGATTTTTAAGTGAATTCCTTTTATCCCCCAATCT
CTTCATGTCTATATAGTGGAATAGAAAATGAACATGAAATTTATTCATGTGCTCAACTCG
AGGCACAACAGCAAGAATTGTCAAAAGCAATTGAGACAACAACAGCAGTAGTTGAGACAC
AAAGTGACATAAAAGTGATTAAAAAGGACAATATTGTGCTCGGTATAAGTGATTTGAAAC
AACAGCAACAGAAAAAATTATCAACTGCCGAAGCAAAAGGCATTAGTGGAACAATTACTA
ATAATAATATTAAAAGTGCTGCCAATAATAAACCATTAACGATTGCTGACAAAAAGGAAA
ACAATAGCGATAACAAGAACACAAGTGTTGGACAATCATTGGTTACAATCAATCCAATAA
ATACTATTAAAGTTAATAACTGTGAAATTATAAATCGTCGTCCACACTCAGTTACGGCTG
CAATTTTCGCACAGTCGACAGTTTTAAAATCACAAGCAATAGCTACATCTAATGCTATAA
TAGCATCTGCTGCTCAAATATCCAGGAAAACTAAAAAACAAACAGCAACAGCAGGAATAA
AAGTATTTCGTCCAACACAGCAAGTAGTAGCAAACGCCGCTACAAGCGTTACATCAACAA
TTTTTGCACCACGTACGAAGGATATGAATAAAGGATACTTGATGTTCGCAGAAGACGACA
CAGGACTAACAATGCTGAAAGATGAGCCGGATGATTTAACACATTTGGCACCAACTGCCG
GCGACGCATGCATCTCGCTTGATGAATCTGCTCCTTTCTTTGATATGTTTGATGACTTCA
TGATACCCGATAATTATAATACATTGTTAACAGACGATTTGGACAGTCAATGCAGTAAAA
CAACAACAACGAGTAGTTCTAGTAATGATCCATTTATTAACTATAGAGATGAGTCAAGTG
ATGTTAGCAATTCTCCTCACTTGCTTTCACCGGGTTTGTCAAAGAGTCCTGGTGCAAATA
GTAGTATACCGTCTTTATGCAGTCCTGGCTCTCTACCAGAAGATGAGCTTGCATTTATGA
CATTAAATATGGATGATGATTTGGATATGTCTATGCGTGCCCCTTATATTTCAATGAGCG
AATCAGCTGAGCTTCCATTACTAATCGCAGAAGATCTTATGTGGGGTGCTGCACCTGACA
TAAAACAATCGCTAACAATTAATAGAAAAATGGAAATTCCAATTAATGTAGAGCAAGAAC
AGCAAATAAGCCAACAACAACATACTGAAAGTCCTAACAAACAGCAGCAACAACAAATTA
CAACGCAAAATGTACTTGCAAAGAATGCAATGGATTCGAGTTTAGCATCATTGCTTTGTA
GCCAATTATTGCAGCAACAGCTACTAAATCAGCAACAAACAGAACAACAAATTATCCTAA
GTAAAAATCCAGAAATTAAAATCAAAATTTTGGATAACTTAATTGATGCGACTAACGAGC
TTGATCACAACACCACCAACACTAAAAGCG
>g1184.t7 Gene=g1184 Length=282
MNKGYLMFAEDDTGLTMLKDEPDDLTHLAPTAGDACISLDESAPFFDMFDDFMIPDNYNT
LLTDDLDSQCSKTTTTSSSSNDPFINYRDESSDVSNSPHLLSPGLSKSPGANSSIPSLCS
PGSLPEDELAFMTLNMDDDLDMSMRAPYISMSESAELPLLIAEDLMWGAAPDIKQSLTIN
RKMEIPINVEQEQQISQQQHTESPNKQQQQQITTQNVLAKNAMDSSLASLLCSQLLQQQL
LNQQQTEQQIILSKNPEIKIKILDNLIDATNELDHNTTNTKS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g1184.t7 | MobiDBLite | mobidb-lite | consensus disorder prediction | 192 | 213 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
