General information for g11908.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative fatty acyl-CoA reductase CG5065.
Parent gene
- The parent gene g11908 is located on chr_1: 19181869..19183523 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11908 | g11908.t1 | isoform | g11908.t1 | 19181869 | 19183523 |
| chr_1 | g11908 | g11908.t1 | exon | g11908.t1.exon1 | 19181869 | 19182007 |
| chr_1 | g11908 | g11908.t1 | cds | g11908.t1.CDS1 | 19181869 | 19182007 |
| chr_1 | g11908 | g11908.t1 | exon | g11908.t1.exon2 | 19182061 | 19182165 |
| chr_1 | g11908 | g11908.t1 | cds | g11908.t1.CDS2 | 19182061 | 19182165 |
| chr_1 | g11908 | g11908.t1 | exon | g11908.t1.exon3 | 19182251 | 19183191 |
| chr_1 | g11908 | g11908.t1 | cds | g11908.t1.CDS3 | 19182251 | 19183191 |
| chr_1 | g11908 | g11908.t1 | exon | g11908.t1.exon4 | 19183254 | 19183390 |
| chr_1 | g11908 | g11908.t1 | cds | g11908.t1.CDS4 | 19183254 | 19183390 |
| chr_1 | g11908 | g11908.t1 | exon | g11908.t1.exon5 | 19183454 | 19183523 |
| chr_1 | g11908 | g11908.t1 | cds | g11908.t1.CDS5 | 19183454 | 19183523 |
| chr_1 | g11908 | g11908.t1 | TSS | g11908.t1 | NA | NA |
| chr_1 | g11908 | g11908.t1 | TTS | g11908.t1 | NA | NA |
Sequences
>g11908.t1 Gene=g11908 Length=1392
ATGCATGACTCAAAGCAACTCAATAGTGTTCAGCGATTTTATAAAGATAAAACCATTTTC
ATAACTGGTGCTAGTGGATTAATGGGTAAAGTATTGTTAGAGAAACTATTATATTCATGT
TCTGAACTTAAAAAAATTATTATCTTGATGCGACCGAAGCGTGAAAAAAGTGAATTGGAA
CGAGTTGCTGCATTTGCAAAAATTCCTATTTTTCAAAGAATTCTTAAAGAGAAGCCATCA
GTGATGAATAAAATTGTTCCAGTATTTGGTGATATTACTCAAAATTTACTTGGCCTAAGT
GACGAACATTTAGAAAAAGTCCTTGAATCACAACTTGTTTTCCATGTCGCTGCATCTCTC
CGTCTTGAATTTACTTTAAAATCTAATATTATTATGAATTTAGCTGGAACAAAAAATGTA
ATTGATATTGCGAAAATGATGCCAAATTTACAGTTGATGGTTCACTTTTCAACTGGTTTT
TGTTGTCCTGAATTAAAAGTTTTGGATGAGAAAATAATAGAATGTGATGATGATCCTATG
GATCTAATAAGATGTTCAAAATGGATGAATGAAGCAGCGATGGCTAAATTACAAAAATAT
GTCTTAAAATATCAACCAAATACTTACACTTATAGTAAAAGATTAGCTGAAATATTGTGT
AGAAATGAATATGAAAAAGGTTTAAATATTTGTATTGTGAGACCATCAATAATCATTCCA
TCATTGTATGAGCCTGTTGTCGGTTGGGTTGACTCTCTAAATGGACCGGCTGGTCTCATG
ATGGGTGCTGCTAAAGGAGTCATTAGATCAATGTTGGTAGATAGTGATAGTGAAACTGAA
GCGATTCCTCTTGATATTGCAGTCAATGGAATAATTTTAATTGCTAAAATTGTTGCACTG
CAAGAAAGATCTAAAGAAATAGAAGTCTATAATATCACTGCAAGTGAGAAAAAGAAACGA
AAACTTGGCTATGTTTTAGAAGCTGCAAAAAAAATTAATTTTGAAATTCCTGCTGAAATT
GGACTTTGGTATCCCGACGGACAAATTACTACAAGTAAAATAGCACACACAATTAATGTC
ATATTATTTCATTGGCTGCCTGCTTATTTTATTGACTTTTTGATGCTTTGCTTAGGACAA
AAAAGATTTCAAGGTTTAGAAGTTTTACAATTTTTTACATTGAGGAATTGGAATTTTAAA
TCTGATAAATTTAAAGCAATCAATAAACAATTATCGCCTGAAGAATACAAAATGTTCTTC
ATAGATACAGAATCAGTGCCAGATAGTTTTGAAAATGAATTTATAAGAAACTGTTTTCTA
GGTGGTAGACTTTATGTACTTAAAGAGCCGCTTGAGACAATTCCAAAAGCAAGAATTCAA
ATCAGAATGTAA
>g11908.t1 Gene=g11908 Length=463
MHDSKQLNSVQRFYKDKTIFITGASGLMGKVLLEKLLYSCSELKKIIILMRPKREKSELE
RVAAFAKIPIFQRILKEKPSVMNKIVPVFGDITQNLLGLSDEHLEKVLESQLVFHVAASL
RLEFTLKSNIIMNLAGTKNVIDIAKMMPNLQLMVHFSTGFCCPELKVLDEKIIECDDDPM
DLIRCSKWMNEAAMAKLQKYVLKYQPNTYTYSKRLAEILCRNEYEKGLNICIVRPSIIIP
SLYEPVVGWVDSLNGPAGLMMGAAKGVIRSMLVDSDSETEAIPLDIAVNGIILIAKIVAL
QERSKEIEVYNITASEKKKRKLGYVLEAAKKINFEIPAEIGLWYPDGQITTSKIAHTINV
ILFHWLPAYFIDFLMLCLGQKRFQGLEVLQFFTLRNWNFKSDKFKAINKQLSPEEYKMFF
IDTESVPDSFENEFIRNCFLGGRLYVLKEPLETIPKARIQIRM
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g11908.t1 | CDD | cd05236 | FAR-N_SDR_e | 17 | 327 | 0 |
| 8 | g11908.t1 | CDD | cd09071 | FAR_C | 362 | 447 | 0 |
| 6 | g11908.t1 | Gene3D | G3DSA:3.40.50.720 | - | 3 | 344 | 0 |
| 3 | g11908.t1 | PANTHER | PTHR11011 | MALE STERILITY PROTEIN 2-RELATED | 6 | 463 | 0 |
| 4 | g11908.t1 | PANTHER | PTHR11011:SF12 | FATTY ACYL-COA REDUCTASE | 6 | 463 | 0 |
| 1 | g11908.t1 | Pfam | PF07993 | Male sterility protein | 21 | 290 | 0 |
| 2 | g11908.t1 | Pfam | PF03015 | Male sterility protein | 363 | 449 | 0 |
| 5 | g11908.t1 | SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 10 | 265 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0080019 | fatty-acyl-CoA reductase (alcohol-forming) activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed