Chromosome | Gene | Transcript | Category | ID | Start | End |
---|---|---|---|---|---|---|
chr_1 | g11955 | g11955.t7 | TTS | g11955.t7 | 19785579 | 19785579 |
chr_1 | g11955 | g11955.t7 | isoform | g11955.t7 | 19785720 | 19787658 |
chr_1 | g11955 | g11955.t7 | exon | g11955.t7.exon1 | 19785720 | 19786507 |
chr_1 | g11955 | g11955.t7 | cds | g11955.t7.CDS1 | 19785720 | 19786475 |
chr_1 | g11955 | g11955.t7 | exon | g11955.t7.exon2 | 19786580 | 19786801 |
chr_1 | g11955 | g11955.t7 | exon | g11955.t7.exon3 | 19787494 | 19787658 |
chr_1 | g11955 | g11955.t7 | TSS | g11955.t7 | 19787708 | 19787708 |
>g11955.t7 Gene=g11955 Length=1175
TGTTCATTTTTACAAAAATGATGATGTTTCAGATCAATGTATTCCATATACCAATCGATA
AAGCACATTAAAATGCATCGATTGGTCGAGGGAATAGTGATTTAATTGCGTATTTATCGA
GATATTTCATCTCAAAGTCGCCATTTTTTTGTTTACATTTTCATTTATAATTTATTATCA
TTAAAAATTTTTGGCAGGAGAATACAGATAATGGAAATTTAACAAATAATTCAACAGAAA
ACATTCAAAAACTTAAAGTAAATCAAAAAGTCAATGGATCTCATAATCAGGAAAATTTTG
AAGAGGAGATAGAACATGATGAAGTGCAGTATTTAAATTTAATTCGCAATGTACTGAAAC
GTGGAATAATTCGTGGAGATAGAACTGGTGTTGGTACAATCAGTATTTTCGGTGCACAAA
TGAGATTTAATTTGCGAGATCAATTTCCTTTGCTAACAACTAAAAGAGTTTTTTGGCGAG
GACTTGTTGAAGAATTGCTCTGGTTTATTCAAGGTTCAACAGATGCAAAGCTGTTACAAG
CGAAAAACGTTCGAATTTGGGATGGTAATAGTACCCGAGAGTTTCTCGATGCATCTGGAT
TTCATGATCGTCAAGTTGGTGATTTAGGTCCTGTCTATGGTTTTCAATGGCGGCATTATA
GTGCTGAATATAAAACTTGTAATGACGATTATACTGGTAAAGGTATTGATCAATTAAAAG
ATGTTATCGAGCGTATTAAAACAAATCCAAATGATCGTCGCATTATAATGACTGCATGGA
ATCCAGTTGATATTCCAAAGATGGCTCTTCCACCATGTCATTGTCTTGTCCAGTTTTACG
TTGCTAACGGTGAATTGAGTTGTCAATTGTACCAAAGAAGTGCCGATATCGGTCTCGGAG
TTCCTTTCAATATAGCATCATATGCACTCTTGACCTATATGATTGCTCATGTCACAAACT
TGAAACCAGGTGATTTTGTTCATTCTTTAGGTGATACACATGTTTATCTTAATCACGTAG
AGCCTTTAAAAGAGCAATTGGAACGTAAACCAAAGGCGTTTCCAAAATTAAAAATTAACC
GAGAGGTCGCCAACATTGATGACTTTAAATTCGAAGATTTTGAGTTAATTGGTTACGATC
CTTACCCCACAATAAAAATGGAAATGGCTGTTTAA
>g11955.t7 Gene=g11955 Length=251
MRFNLRDQFPLLTTKRVFWRGLVEELLWFIQGSTDAKLLQAKNVRIWDGNSTREFLDASG
FHDRQVGDLGPVYGFQWRHYSAEYKTCNDDYTGKGIDQLKDVIERIKTNPNDRRIIMTAW
NPVDIPKMALPPCHCLVQFYVANGELSCQLYQRSADIGLGVPFNIASYALLTYMIAHVTN
LKPGDFVHSLGDTHVYLNHVEPLKEQLERKPKAFPKLKINREVANIDDFKFEDFELIGYD
PYPTIKMEMAV
Transcript | Database | ID | Name | Start | End | E.value | |
---|---|---|---|---|---|---|---|
12 | g11955.t7 | CDD | cd00351 | TS_Pyrimidine_HMase | 1 | 204 | 5.63345E-105 |
11 | g11955.t7 | Gene3D | G3DSA:3.30.572.10 | Thymidylate Synthase | 1 | 251 | 2.6E-126 |
4 | g11955.t7 | Hamap | MF_00008 | Thymidylate synthase [thyA]. | 1 | 251 | 30.065117 |
2 | g11955.t7 | PANTHER | PTHR11548 | THYMIDYLATE SYNTHASE 1 | 1 | 251 | 5.5E-154 |
3 | g11955.t7 | PANTHER | PTHR11548:SF2 | THYMIDYLATE SYNTHASE | 1 | 251 | 5.5E-154 |
6 | g11955.t7 | PRINTS | PR00108 | Thymidylate synthase family signature | 9 | 30 | 2.7E-54 |
8 | g11955.t7 | PRINTS | PR00108 | Thymidylate synthase family signature | 102 | 121 | 2.7E-54 |
7 | g11955.t7 | PRINTS | PR00108 | Thymidylate synthase family signature | 128 | 143 | 2.7E-54 |
9 | g11955.t7 | PRINTS | PR00108 | Thymidylate synthase family signature | 146 | 172 | 2.7E-54 |
5 | g11955.t7 | PRINTS | PR00108 | Thymidylate synthase family signature | 184 | 201 | 2.7E-54 |
1 | g11955.t7 | Pfam | PF00303 | Thymidylate synthase | 1 | 251 | 1.2E-105 |
13 | g11955.t7 | ProSitePatterns | PS00091 | Thymidylate synthase active site. | 113 | 141 | - |
10 | g11955.t7 | SUPERFAMILY | SSF55831 | Thymidylate synthase/dCMP hydroxymethylase | 1 | 251 | 7.85E-125 |
14 | g11955.t7 | TIGRFAM | TIGR03284 | thym_sym: thymidylate synthase | 1 | 251 | 5.9E-100 |
IUPRED3 score over 0.5 is predictive of a disordered region.
GOID | TERM | ONTOLOGY |
---|---|---|
GO:0006231 | dTMP biosynthetic process | BP |
GO:0004799 | thymidylate synthase activity | MF |
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
TPM values are indicated as average +/- STDEV.
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.