General information for g11970.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Protein lap4.
Parent gene
- The parent gene g11970 is located on chr_1: 20007751..20020803 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11970 | g11970.t1 | TSS | g11970.t1 | 19963419 | 19963419 |
| chr_1 | g11970 | g11970.t1 | isoform | g11970.t1 | 19964332 | 20020803 |
| chr_1 | g11970 | g11970.t1 | exon | g11970.t1.exon1 | 19964332 | 19964493 |
| chr_1 | g11970 | g11970.t1 | cds | g11970.t1.CDS1 | 19964332 | 19964493 |
| chr_1 | g11970 | g11970.t1 | exon | g11970.t1.exon2 | 19969370 | 19969487 |
| chr_1 | g11970 | g11970.t1 | cds | g11970.t1.CDS2 | 19969370 | 19969487 |
| chr_1 | g11970 | g11970.t1 | exon | g11970.t1.exon3 | 19973977 | 19974145 |
| chr_1 | g11970 | g11970.t1 | cds | g11970.t1.CDS3 | 19973977 | 19974145 |
| chr_1 | g11970 | g11970.t1 | exon | g11970.t1.exon4 | 19974980 | 19975393 |
| chr_1 | g11970 | g11970.t1 | cds | g11970.t1.CDS4 | 19974980 | 19975393 |
| chr_1 | g11970 | g11970.t1 | exon | g11970.t1.exon5 | 19975464 | 19975830 |
| chr_1 | g11970 | g11970.t1 | cds | g11970.t1.CDS5 | 19975464 | 19975830 |
| chr_1 | g11970 | g11970.t1 | exon | g11970.t1.exon6 | 19975894 | 19975945 |
| chr_1 | g11970 | g11970.t1 | cds | g11970.t1.CDS6 | 19975894 | 19975945 |
| chr_1 | g11970 | g11970.t1 | exon | g11970.t1.exon7 | 19977143 | 19977357 |
| chr_1 | g11970 | g11970.t1 | cds | g11970.t1.CDS7 | 19977143 | 19977357 |
| chr_1 | g11970 | g11970.t1 | exon | g11970.t1.exon8 | 19977486 | 19977611 |
| chr_1 | g11970 | g11970.t1 | cds | g11970.t1.CDS8 | 19977486 | 19977611 |
| chr_1 | g11970 | g11970.t1 | exon | g11970.t1.exon9 | 19977683 | 19977995 |
| chr_1 | g11970 | g11970.t1 | cds | g11970.t1.CDS9 | 19977683 | 19977995 |
| chr_1 | g11970 | g11970.t1 | exon | g11970.t1.exon10 | 19981605 | 19981694 |
| chr_1 | g11970 | g11970.t1 | cds | g11970.t1.CDS10 | 19981605 | 19981694 |
| chr_1 | g11970 | g11970.t1 | exon | g11970.t1.exon11 | 19982101 | 19982605 |
| chr_1 | g11970 | g11970.t1 | cds | g11970.t1.CDS11 | 19982101 | 19982605 |
| chr_1 | g11970 | g11970.t1 | exon | g11970.t1.exon12 | 19982665 | 19982797 |
| chr_1 | g11970 | g11970.t1 | cds | g11970.t1.CDS12 | 19982665 | 19982797 |
| chr_1 | g11970 | g11970.t1 | exon | g11970.t1.exon13 | 19982908 | 19983091 |
| chr_1 | g11970 | g11970.t1 | cds | g11970.t1.CDS13 | 19982908 | 19983091 |
| chr_1 | g11970 | g11970.t1 | exon | g11970.t1.exon14 | 19983186 | 19983523 |
| chr_1 | g11970 | g11970.t1 | cds | g11970.t1.CDS14 | 19983186 | 19983523 |
| chr_1 | g11970 | g11970.t1 | exon | g11970.t1.exon15 | 19984287 | 19984571 |
| chr_1 | g11970 | g11970.t1 | cds | g11970.t1.CDS15 | 19984287 | 19984571 |
| chr_1 | g11970 | g11970.t1 | exon | g11970.t1.exon16 | 19986804 | 19986914 |
| chr_1 | g11970 | g11970.t1 | cds | g11970.t1.CDS16 | 19986804 | 19986914 |
| chr_1 | g11970 | g11970.t1 | exon | g11970.t1.exon17 | 19987076 | 19987255 |
| chr_1 | g11970 | g11970.t1 | cds | g11970.t1.CDS17 | 19987076 | 19987255 |
| chr_1 | g11970 | g11970.t1 | exon | g11970.t1.exon18 | 19987651 | 19988241 |
| chr_1 | g11970 | g11970.t1 | cds | g11970.t1.CDS18 | 19987651 | 19988241 |
| chr_1 | g11970 | g11970.t1 | exon | g11970.t1.exon19 | 19988308 | 19988520 |
| chr_1 | g11970 | g11970.t1 | cds | g11970.t1.CDS19 | 19988308 | 19988520 |
| chr_1 | g11970 | g11970.t1 | exon | g11970.t1.exon20 | 19996700 | 19998691 |
| chr_1 | g11970 | g11970.t1 | cds | g11970.t1.CDS20 | 19996700 | 19998691 |
| chr_1 | g11970 | g11970.t1 | exon | g11970.t1.exon21 | 19999498 | 19999609 |
| chr_1 | g11970 | g11970.t1 | cds | g11970.t1.CDS21 | 19999498 | 19999609 |
| chr_1 | g11970 | g11970.t1 | exon | g11970.t1.exon22 | 20002039 | 20002309 |
| chr_1 | g11970 | g11970.t1 | cds | g11970.t1.CDS22 | 20002039 | 20002309 |
| chr_1 | g11970 | g11970.t1 | exon | g11970.t1.exon23 | 20010255 | 20010404 |
| chr_1 | g11970 | g11970.t1 | cds | g11970.t1.CDS23 | 20010255 | 20010404 |
| chr_1 | g11970 | g11970.t1 | exon | g11970.t1.exon24 | 20014246 | 20014390 |
| chr_1 | g11970 | g11970.t1 | cds | g11970.t1.CDS24 | 20014246 | 20014390 |
| chr_1 | g11970 | g11970.t1 | exon | g11970.t1.exon25 | 20016395 | 20016610 |
| chr_1 | g11970 | g11970.t1 | cds | g11970.t1.CDS25 | 20016395 | 20016610 |
| chr_1 | g11970 | g11970.t1 | exon | g11970.t1.exon26 | 20019847 | 20020803 |
| chr_1 | g11970 | g11970.t1 | cds | g11970.t1.CDS26 | 20019847 | 20020803 |
| chr_1 | g11970 | g11970.t1 | TTS | g11970.t1 | NA | NA |
Sequences
>g11970.t1 Gene=g11970 Length=8409
ATGTTTAAGTGCATTCCCATATTCAAAGGATGTAATCGACAAGTGGAGTTTGTGGATAAA
AGACACTGCTCCTTACCAAATGTTCCCGAGGAAATTTTACGCTATTCAAGGAGTCTCGAG
GAATTGCTACTTGATGCAAATCATATTCGAGATTTGCCCAAGAATTTTTTCCGATTACAT
CGATTACGAAAGCTCGGCCTGAGTGACAATGAAATTCATAAACTTCCACCTGATATACAA
AATTTTGAAAATCTTGTAGAATTAGACGTATCAAGAAATGATATTCCTGACATTCCAGAT
GACATTCGCCATTTACGGCTTTTACAGATTGCTGATTTCAGCTCAAATCCTATTCCAAAA
TTACCAGCTGGTTTCTCACAGCTTAAAAGTTTGACAATATTAGGATTAAATGACATGTCC
TTGACCTCATTGCCAGCTGATTTTGGATGCTTAACACAATTGGAGTCACTAGAATTGCGC
GAAAATCTTCTTAAAAATCTTCCCGAGTCAATAAGTCAGTTAACAAAACTCGAGCGTTTA
GATTTGGGCGATAATGAAATAGAAGAATTGCCGCCACATTTGGGTGATTTACCATCACTG
CAAGAACTATGGCTCGATCATAATCAATTGCAGCGACTGCCGCCCGAAATTGGTAAACTA
AAGAATCTTATGTGTTTGGATGTGTCAGAAAATCGTCTTGAAGATTTACCTGAAGAAATT
GGAGGCTTAGAAAATCTTACTGATTTGCACTTGTCACAAAATCTTCTTGAATTTATACCA
AATGGTATTGAGAAGTTGACTAAATTGACAATATTAAAGTTGGACCAAAATCGCTTGCAT
GTTCTTAATGAAAGCATTGGAATGTGTGAAAATATGCAAGAGCTTATTCTAACTGAGAAC
TTTCTTATCGAATTGCCAAGCTCAATTGGGCGGATGTCGAAATTGAATAATTTAAATGTC
GATAGGAATTCACTCGTATCGGTGCCGTCGGAAATTGGCAATTTGACCAATTTAGGTGTG
CTGAGTTTGCGGGACAATAAATTATCGAAATTGCCATCCGAGCTTGGCAATTGTGGTGCA
CTACATGTTCTCGATGTGTCGGGCAATCGACTTCAATATTTGCCATATTCGTTAGTTAAT
TTACAACTTAAAGCTGTTTGGTTGTCAGAAAATCAAGCGCAGCCATTGTTGACTTTTCAA
CCTGATACTGATGAAGCAACGGGCGAGCAGGTTCTAACCTGCTTCTTGTTGCCACAACAA
GAAATGCAACCCGTTAGTCCAGATAATCGTGAAGAGTCTGATAATGAAGATTGGCAAGCA
CGGGAAGAATCACGAACACATTCGGTAAAGTTTAGCGAGGATTCAGCTACTGATAAAGAG
ACACCGTTTGTAAGGCAAAATACACCACATCCGAAGGAGCTAAAGCTCAAAGCACACAAA
CTTTTTTCAAAAGACAAGAAGGATGACGACTCAAATTTGCAGCCCCTGTCAGAAGAGTCA
CAACGCACAGAAAATGGTGAAACACCGACAGTTGAAAATAAATTTGAAATGAATCATGCA
TATCATCAAGATGTGTCATCAACAGTTGCGCACACAGAAAATCAAATCATATCGACTAAC
GATGAGTCGGGTGAAAAGCGTGTTGGATTTCATGATGATGACAACCGAAATGAAGAGGAA
GAGGAAGAAAATGACAAACGACCCGTATCAAAATTACATCGTCGTGATACACCACATCAT
TTGAAAAATAAGCGTGTTCAGCAACATTTAAATGATAAAGCGGCAAATGTGATTCTAAGT
AGATTAAAAGAAAAACCGATACCAACAGTTGAAGAAATTGCGAATGCAGAAAATGCAATG
CCTTTAGTGCAAGATGTTGGATTACCAATTGTCGATGTAAATCAGAATGGAATTGAAATA
TCAGCAAACTTAAATGATTCCACAGATGCACTTACTGCATTGAAAGAAGAAAGATTGGAG
ATTCATATTGAACGAACATCTGCTGGTCTTGGATTGAGTATTGCAGGTGGAAAAGGTTCA
ACACCATACAAAGGCGATGATGAAGGAATTTTCATTTCACGTGTAACCGAAGGTGGTCCA
GCAGATCTCGCTGGTTTACGTGTCGGTGATAAAGTATTAAAAGTTAATGGTGTGTCAGTA
CATGACGCTGATCATTATGACGCAGTTGAAGTGCTAAAAGCATGTGGTGCAGTTTTAGTG
CTACTAGTTTCGCGTGAAGTTACTCGACTTGTTGGACATCCAGTATTCCTTGAAAATGGA
GAACTTGCAAAAATTGCTATTGATCGTAAAGAAAATGGTGGCATTGGAAAAATTATCCCC
GCACCAATTCAAATTCAACCGCAACAACAACAATTCACAAGTGAAACACCACATTCCGCT
CCAATTCTGGACACTTCTTCAAGTCATCATGCAGTCGCTAGTCATATTCTGCATGGTAAT
ACTTCAGATGTCGTTCATAAAGTAACACTACACACCACACTCATTAGGGATCAAATTGGT
CAGGGACTAGGTTTCTCAATAGCTGGCGGTAAAGGCCATCAACCATTTGTCGATGGATCA
GATGGCATATATATTTCACGACTAACTGAAGGTGGCATTGCACAGCGCGATGGGAAAGTG
CAAGTTGGTGATCGTATTTTAGCGATTAACGGTGTGGATATGCGCGCAGCTAATCATGAT
CATGCCGTGCAGTTACTAACCGATACACAAAGATTCGTTCGACTTGTGATTGAACGCGAG
GTTAAGGGACCAATTGAACCACCTCAAAGTCCTCGAAGTCCGCTACTTAAAGGATTAAGT
CCAACTGGATATATGGCTAATAGGCCGACATACACGGGTTACAGACGATCAATTGGAGAT
GTTTTAGAAACGGGAAATGACACCTTTAACAAAAGCAAAGAAGTAGAAGTAGAACATCAT
AATAACAATAACAGCACATTAAAAACAACAGCCACAATTCTAACACACAACACAACTTCA
TCAGCTGAAAAAATTCAACCACAGCAACAGCAGCAAAATCAAGAACTGACATCATCAGAA
GCATTCATTAAAAATGAGCAACAACAAGCTGCACCACAACCAGCACCAAGAACTCGATTA
TCATCACAAAATTCAATTCCAATGACGAATGGAAGCAGTAATCTTAAGAGTGATGATCCA
GCACAGGCACCGCCACGTCCAATGACGAGTGATGATTTCCAAGCGATGATTCCAAAGCAT
TTTCTTAGTGGTGACAAAAGTATTGAAGTGCAAAAAACGTCACCGATTGTAGAGCAAGGA
GCATCGGCTGTTACAGTAACAGTCAAAAAAGGACAATCAGATTTGCCAATGCTGCCACCG
GCACCAACTGAGCTTGGACTTGTTACTGAAACCATCACAAAATCCACATTCACTGAAACT
GTAATGACACGTGTCACAGATAATCGTTTAATGGAACCATTAATTAGTGAGGAAGTAGTG
CTACCGAAAAATCAAGGACCATTAGGATTTTCAATCATCGGTGGAACCGATCATTCGTGT
GTACCTTTTGGAGGCAGAGATCCAGGAATTTTCATATCACATATTGTTCCCGGTGGAATA
GCTGCACAATGTGGTAAACTTCGAATGGGTGATCGTATATTGCGAGTTAATGGCACAGAT
GTGACAAGTGCAACACATCAAGAAGCTGTAATGGAATTATTGAGACCGTGCGAAGAAATT
AAATTAACTGTTCAACATGATCCATTACCAGCTGGTTTCCAGGAAGTAACGATCGTAAAA
GGCGAAGGCGAACGTCTGGGTATGCATATTAAAGGTGGCCTCAAAGGACAACGTGGCAAT
CCACTTGATGCAAACGACGAAGGTGTTTTCATATCAAAAATTAACAGTACTGGTGCTGTA
CGACGCGATGGTCGTTTAAAAGTTGGCATGCGAATTCTTGAGGTCAATGGACAGTCATTG
CTTGGTGCAACTCATCAAGAAGCAGTCGATAGTTTACGTTTGAGTGCAAATCGTTTGAAC
TTGGTCGTATGCAAGGGTTATGAAAAATCAGATTTAATTCATGGAATGATCTCATCTGGA
ACTGGCAGTCGCTTGAGCAGTCGAGCATCAGAGACTGGTTCAGAAATGAGTTTGGATCAG
GATGATTTTGAGCATTCAACTGTAATACAAAACTCACATGCTGAAGGTTTACACAATAAA
TCAACTGAAGACGTATTCGAGGAAGGACGTAGTGAAGAGATAGTAAATACGAGTCAAGAG
ATTGCTCGTCTCGCTAACGAGGTTGCATTACTCAGTCAGGCAGAAAATGATACTGCATTG
GTCAAGGCAAAGGAAAAGAGCACACCTGAAAAGGTATTGGATATTGTTCGTGCAGCAGAA
TCGTTAGCGCTGAGCGAAGTAATTCCACCAAAATCACCAGTTGATCATCATCATGAAACA
TTACAAAAGACTACAACAATTGTGATGTCAAAACACACGCTCGACACACTCAATACAGCC
ACGAGTGCTGATTCGCAGCAATCATCATCGCTACAGCAACAGCCCATGCAAACGACACCA
TCACAGATTGAAAGCGTTCAACCAACGAATATCACTAACATTCCTTCCTCCGCTCAAGTA
ACTGGAATGAAAAGTTCAATGCATGAAAATCTTTCTGTTAATTCTGCTCCTAAAAACACT
TCTACACCCTCAATGATGCTGAAATCCTCAACATCACATTTGCCATATACAGCAAGTAAT
GTTGATGAATTTCTTCAAAAGAACTTTGTCGAACAACAAAAACGTGAACGCGTGCTGTCA
AGTAGCAGTGAGGATAATTTTGATTATGAGCCATATTCACGTCGAGAATTTCGTATGGAC
TTGAAGGGAGTGACGGCAGAAGATAAAGACACGCCAACATCTGGCTATCATACTTCGCCT
AATGAGCATGAGAAATGGCCTCAGAATCAAGGCATAATGAGTCCTGAGAGCAGTGATTAT
GAAAAATTCGATCATTCTCAAAGGAATGCAACATATCGCAAGTCAGTCAGCTTCGATTTA
GATGTTGAAGTTGATGAAGAAAAAACCGAAGAAAAGAAGCAACAGCAGCAGCCGAAAAAG
ATTAAAAGTATCTTGCGTTCTCCCAGTCCGAGTGTTTATAGCACACCAATACCACCGCCA
TTAATCCCAACAGATGATGATGATGATGAAGATGAGGATTTAGATGAAGGCAGTGACAAT
CCCTTTAAAAAAGAATTCACAGAAATGGCACTTAAAGCCATTTGTCCTATTTCTGATTCT
GACAATTCTGATAGTCAACAAATTTCTGAAAATAATTTAAATCGATCAACGACATCAAAA
ATTCCAGTTTCAAAGACAATTTTTAAAGCGACAGCAAATCTTGTTGAGCCTGTTAAAACT
AAAACTCCTCCACCACGTCCACCAAAACCACAAGTAAAACGAGCTGAAATGAAAAAGAAT
GAAGGTTTGGAGAAGCTAAGTCAACAAATGGACGATGAAGATTTCTTGGAATTTGTTCAT
GACGTTCAGACCAATACAATTCAAGAAATTGCTCCATTCAATCCTGAGAGTAGTCCATTG
CCACCACTTCCCAAACTTCCTCCTCCTTCTCTTAAATCTTTCAAACGAACAGGCAGTCTC
GAGAGACCAAAAGAAAGCCCTCCACCACCACCAACTCCGATTTTGAAATGTCAACCGGAA
ATTGTTGAAATTCTTCCCGCTAAATTTGATACATTCCCACGCAAACAAACTGCCAATTTT
GTCAATGAAAATTCAGCAACAAATGTGCTTGTCACTGAGGAAGAACATCGTGAGATTTTA
TTGACCGAGAATGAAATTCGTAATGCAATGCTTTATGAGTATGTTGATGATAAAAATCTA
CAATCTAAATCTGAATTATTGAATCCAAATTTTTCTTCCAACAATCCTTTCTTGGACACT
GACACAATTGCATCATCTACCTCGACTTTTAGCTATCAAAGTTCACCAAATATCATGTCA
CCGACATCAACACTCGAACGATCAAGCGAGAGCACTTATACACCAATTTATAGCGCTCCA
CAAGTGCTACCCGTTCACTATGGTCAATTGCCAAAGCCTCAACATACGGGCTACCTTGTT
GCCCTTCCACAGCAACAATATGTCATTCAACAGCCTCAGCAACAACAACAACAGCCAATT
TTGGTGAGTGGTGATGGTCAAAATCCATTCTATGTTACTAATAGCTATAGCAATAACACA
ATTGCAAATAATCATCATCAAACATTATTAATGCAATCGGCTTATATGCCAGCACCATCA
CCACTTGCGTCATATAATAGAACAATTCACACACAACAGCAACAACAATCACAATTTGTT
TATGAGCATGAACAACCACAACAAACTAGTTTTTATTCTAATTTTAATAGTAATAGTGTT
AATATGCAGCAACAACAAATGAATTATTCAGAATTATCACCGATTAAAGTTAATCAAGTA
CAACAACACTTTGTATATGCAAAAGACAGCGATCAACAGAAATCACCTCAAATGACTTCG
TTTGGGAAGCAAACTGAATCACCAACACCACCATCATCTGTAAAAGCAGAAACACCGAAA
ACAGTATCAGATAAGAAGCGATTTTTTGAGCATGTAATGGAAGATCAACAAAAACCAACA
CCTAAATCAGACAAATCCTTCTCGTTTCTATCTGAGGACGAAATTGAGAAACTGAGGCAA
GAGAATGAAAAGAAAATTGCAACGATAACGCGTGAAACAAAGAAAAAGATTGCATCAGCA
ATGGCTACTGGAGTGACAGCAAGTGATGACAACATTAACAACAATGATCAATTTAATGAC
AATGTCAATGAAGACGATGAAGAATTTTATAGTAAAAATAAAAATCTTATCATTAGTCAA
CATGTCATGAATACTGAGATTGATGATGACACTAATAATAGATCAAAATCCCCAACAGCA
AAAGTACAACACAATACAATCAGTCGAATACCAATTCGTACTGCAAATGCTGAAAAACGT
GCTCGTGAGATGGGTTTATTAGAGGATATCGATGAAACAAATTTGAGCCCATCGCAGCTC
AGGGCACTTAGAGCAGAAAAACGAGCAGCCTGGCGTCAAGCGAGACTTAAATCATTGGAG
CAAGACGCAATACAGGCACAAATTATGATTCAAAGTTTGAACAGCGAAATTGCTAATAAA
CCTCGTGACAAACTAGATGGTGTAGAAGAGGAGGAGTCTAACGATGATTTAATAACAAAA
ACGACTACAAAAAGCCGACTAAAGTTTCCTCGCATTGCAATAAAACTTCGTCCTGGTCAA
GTGACAGTGCGAGAAAAAGAGACGATTTTAGATGAAAAAGTTATTCAACGAACCGAAGAG
GTTCCCGATCCAGTTAGTGGTGAACCAACGATACAAACATTCGAATATGTCGAGAAAGTC
ATCGAACGAGAGGTTGAAACATGTCAGGAGAAAATTTTTTCTCTCGAACTTGAAGACCCA
AAATCATTAGAATCACCATCGACACCATCAACAGAGAGCTTTAGCATTACAGAGTCAATT
ATTGTCGAGCAACAGCCACATGATGACAGCGATGATAATCAATCAATGATCACTGTCTGT
CCAAACAACACTGATGACACTTTTGTATTAAATCCAACAGATCCGGATGATTATATCAAC
GCTAATGTTATTGAAACATCCACGCAAATAAAAACAATTGTCGAGGTCATCAATCCGATG
CTAACGGGCGATGGAACAGCAACTGAAATTGCGGTTGGTCGGCCTGATGATCTTGAGTCC
TTCAATCAAGAAGTAGGCGATGATTTTGATGGTGTAACATTTCGTCGTGAGTTGTCACTG
AACGACAAGATGAAAAATGTCCTCAAAGAGCTTAAAGAAAATGAAAAAGTTCGATTAAGT
TTATCGCGTAGTATGGAAGAAGATGAAGATGAAAATGAAAACGTAGAGAACGTGCCGGAA
TCAAGTGAAAATGATGAAGCCGTGAGCACATCATATGAGGAAAAGCAGGGCAGTATAGGA
ACAGTTTTTATGGTTCGTGAGCGTCTTATAAACGATTTTTACGATCATCAGCAAGTGCCT
GAGCATGCGACAGATGAAATTCAAGCAAGCATCGACAGTTGCCAAGTGATCTCAAATCCA
AGTGTCGATGAGTTTCTTGCAAATGAAATTCGACACAGTCAAGATACAATGACTGCACGT
AAAGAAACTTTAACACTTGATTTAACGAAAACAACTGAAACGACACTACAAGACGATGAC
GACGATGAAGAAGACGAGACGACCACTGAGAACACGCCAACAACACCAACGAAAATGCTA
CCAGGGAGCAATGCGAGTTCAGGTGGAAAGAAAAAACGACGAAAGAGCAAGGGAAAGGCA
AAGAAATAA
>g11970.t1 Gene=g11970 Length=2802
MFKCIPIFKGCNRQVEFVDKRHCSLPNVPEEILRYSRSLEELLLDANHIRDLPKNFFRLH
RLRKLGLSDNEIHKLPPDIQNFENLVELDVSRNDIPDIPDDIRHLRLLQIADFSSNPIPK
LPAGFSQLKSLTILGLNDMSLTSLPADFGCLTQLESLELRENLLKNLPESISQLTKLERL
DLGDNEIEELPPHLGDLPSLQELWLDHNQLQRLPPEIGKLKNLMCLDVSENRLEDLPEEI
GGLENLTDLHLSQNLLEFIPNGIEKLTKLTILKLDQNRLHVLNESIGMCENMQELILTEN
FLIELPSSIGRMSKLNNLNVDRNSLVSVPSEIGNLTNLGVLSLRDNKLSKLPSELGNCGA
LHVLDVSGNRLQYLPYSLVNLQLKAVWLSENQAQPLLTFQPDTDEATGEQVLTCFLLPQQ
EMQPVSPDNREESDNEDWQAREESRTHSVKFSEDSATDKETPFVRQNTPHPKELKLKAHK
LFSKDKKDDDSNLQPLSEESQRTENGETPTVENKFEMNHAYHQDVSSTVAHTENQIISTN
DESGEKRVGFHDDDNRNEEEEEENDKRPVSKLHRRDTPHHLKNKRVQQHLNDKAANVILS
RLKEKPIPTVEEIANAENAMPLVQDVGLPIVDVNQNGIEISANLNDSTDALTALKEERLE
IHIERTSAGLGLSIAGGKGSTPYKGDDEGIFISRVTEGGPADLAGLRVGDKVLKVNGVSV
HDADHYDAVEVLKACGAVLVLLVSREVTRLVGHPVFLENGELAKIAIDRKENGGIGKIIP
APIQIQPQQQQFTSETPHSAPILDTSSSHHAVASHILHGNTSDVVHKVTLHTTLIRDQIG
QGLGFSIAGGKGHQPFVDGSDGIYISRLTEGGIAQRDGKVQVGDRILAINGVDMRAANHD
HAVQLLTDTQRFVRLVIEREVKGPIEPPQSPRSPLLKGLSPTGYMANRPTYTGYRRSIGD
VLETGNDTFNKSKEVEVEHHNNNNSTLKTTATILTHNTTSSAEKIQPQQQQQNQELTSSE
AFIKNEQQQAAPQPAPRTRLSSQNSIPMTNGSSNLKSDDPAQAPPRPMTSDDFQAMIPKH
FLSGDKSIEVQKTSPIVEQGASAVTVTVKKGQSDLPMLPPAPTELGLVTETITKSTFTET
VMTRVTDNRLMEPLISEEVVLPKNQGPLGFSIIGGTDHSCVPFGGRDPGIFISHIVPGGI
AAQCGKLRMGDRILRVNGTDVTSATHQEAVMELLRPCEEIKLTVQHDPLPAGFQEVTIVK
GEGERLGMHIKGGLKGQRGNPLDANDEGVFISKINSTGAVRRDGRLKVGMRILEVNGQSL
LGATHQEAVDSLRLSANRLNLVVCKGYEKSDLIHGMISSGTGSRLSSRASETGSEMSLDQ
DDFEHSTVIQNSHAEGLHNKSTEDVFEEGRSEEIVNTSQEIARLANEVALLSQAENDTAL
VKAKEKSTPEKVLDIVRAAESLALSEVIPPKSPVDHHHETLQKTTTIVMSKHTLDTLNTA
TSADSQQSSSLQQQPMQTTPSQIESVQPTNITNIPSSAQVTGMKSSMHENLSVNSAPKNT
STPSMMLKSSTSHLPYTASNVDEFLQKNFVEQQKRERVLSSSSEDNFDYEPYSRREFRMD
LKGVTAEDKDTPTSGYHTSPNEHEKWPQNQGIMSPESSDYEKFDHSQRNATYRKSVSFDL
DVEVDEEKTEEKKQQQQPKKIKSILRSPSPSVYSTPIPPPLIPTDDDDDEDEDLDEGSDN
PFKKEFTEMALKAICPISDSDNSDSQQISENNLNRSTTSKIPVSKTIFKATANLVEPVKT
KTPPPRPPKPQVKRAEMKKNEGLEKLSQQMDDEDFLEFVHDVQTNTIQEIAPFNPESSPL
PPLPKLPPPSLKSFKRTGSLERPKESPPPPPTPILKCQPEIVEILPAKFDTFPRKQTANF
VNENSATNVLVTEEEHREILLTENEIRNAMLYEYVDDKNLQSKSELLNPNFSSNNPFLDT
DTIASSTSTFSYQSSPNIMSPTSTLERSSESTYTPIYSAPQVLPVHYGQLPKPQHTGYLV
ALPQQQYVIQQPQQQQQQPILVSGDGQNPFYVTNSYSNNTIANNHHQTLLMQSAYMPAPS
PLASYNRTIHTQQQQQSQFVYEHEQPQQTSFYSNFNSNSVNMQQQQMNYSELSPIKVNQV
QQHFVYAKDSDQQKSPQMTSFGKQTESPTPPSSVKAETPKTVSDKKRFFEHVMEDQQKPT
PKSDKSFSFLSEDEIEKLRQENEKKIATITRETKKKIASAMATGVTASDDNINNNDQFND
NVNEDDEEFYSKNKNLIISQHVMNTEIDDDTNNRSKSPTAKVQHNTISRIPIRTANAEKR
AREMGLLEDIDETNLSPSQLRALRAEKRAAWRQARLKSLEQDAIQAQIMIQSLNSEIANK
PRDKLDGVEEEESNDDLITKTTTKSRLKFPRIAIKLRPGQVTVREKETILDEKVIQRTEE
VPDPVSGEPTIQTFEYVEKVIEREVETCQEKIFSLELEDPKSLESPSTPSTESFSITESI
IVEQQPHDDSDDNQSMITVCPNNTDDTFVLNPTDPDDYINANVIETSTQIKTIVEVINPM
LTGDGTATEIAVGRPDDLESFNQEVGDDFDGVTFRRELSLNDKMKNVLKELKENEKVRLS
LSRSMEEDEDENENVENVPESSENDEAVSTSYEEKQGSIGTVFMVRERLINDFYDHQQVP
EHATDEIQASIDSCQVISNPSVDEFLANEIRHSQDTMTARKETLTLDLTKTTETTLQDDD
DDEEDETTTENTPTTPTKMLPGSNASSGGKKKRRKSKGKAKK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 26 | g11970.t1 | CDD | cd00992 | PDZ_signaling | 660 | 743 | 1.86071E-24 |
| 27 | g11970.t1 | CDD | cd00992 | PDZ_signaling | 833 | 918 | 9.73734E-21 |
| 29 | g11970.t1 | CDD | cd00992 | PDZ_signaling | 1158 | 1245 | 5.93979E-23 |
| 28 | g11970.t1 | CDD | cd00992 | PDZ_signaling | 1255 | 1344 | 2.69288E-19 |
| 22 | g11970.t1 | Coils | Coil | Coil | 1414 | 1434 | - |
| 24 | g11970.t1 | Coils | Coil | Coil | 2235 | 2255 | - |
| 23 | g11970.t1 | Coils | Coil | Coil | 2376 | 2396 | - |
| 25 | g11970.t1 | Coils | Coil | Coil | 2638 | 2658 | - |
| 17 | g11970.t1 | Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 2 | 116 | 2.4E-23 |
| 15 | g11970.t1 | Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 117 | 212 | 6.6E-27 |
| 16 | g11970.t1 | Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 214 | 403 | 1.8E-43 |
| 20 | g11970.t1 | Gene3D | G3DSA:2.30.42.10 | - | 645 | 750 | 2.9E-29 |
| 19 | g11970.t1 | Gene3D | G3DSA:2.30.42.10 | - | 805 | 924 | 2.3E-26 |
| 18 | g11970.t1 | Gene3D | G3DSA:2.30.42.10 | - | 1151 | 1249 | 1.5E-28 |
| 21 | g11970.t1 | Gene3D | G3DSA:2.30.42.10 | - | 1250 | 1354 | 7.9E-28 |
| 70 | g11970.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 419 | 508 | - |
| 79 | g11970.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 427 | 460 | - |
| 66 | g11970.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 470 | 495 | - |
| 71 | g11970.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 537 | 581 | - |
| 73 | g11970.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1500 | 1527 | - |
| 72 | g11970.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1621 | 1668 | - |
| 65 | g11970.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1631 | 1656 | - |
| 68 | g11970.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1683 | 1823 | - |
| 69 | g11970.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1683 | 1698 | - |
| 77 | g11970.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1758 | 1786 | - |
| 63 | g11970.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 2167 | 2203 | - |
| 76 | g11970.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 2167 | 2198 | - |
| 74 | g11970.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 2639 | 2675 | - |
| 64 | g11970.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 2646 | 2660 | - |
| 67 | g11970.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 2661 | 2675 | - |
| 62 | g11970.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 2749 | 2802 | - |
| 75 | g11970.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 2770 | 2784 | - |
| 78 | g11970.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 2788 | 2802 | - |
| 7 | g11970.t1 | PANTHER | PTHR23119:SF44 | PROTEIN SCRIBBLE HOMOLOG | 1 | 1500 | 0.0 |
| 8 | g11970.t1 | PANTHER | PTHR23119 | DISCS LARGE | 1 | 1500 | 0.0 |
| 1 | g11970.t1 | Pfam | PF13855 | Leucine rich repeat | 37 | 95 | 2.5E-8 |
| 2 | g11970.t1 | Pfam | PF13855 | Leucine rich repeat | 198 | 256 | 2.4E-9 |
| 3 | g11970.t1 | Pfam | PF00595 | PDZ domain | 660 | 743 | 3.1E-16 |
| 4 | g11970.t1 | Pfam | PF00595 | PDZ domain | 836 | 918 | 3.3E-18 |
| 6 | g11970.t1 | Pfam | PF00595 | PDZ domain | 1159 | 1245 | 1.7E-19 |
| 5 | g11970.t1 | Pfam | PF00595 | PDZ domain | 1256 | 1343 | 1.1E-11 |
| 81 | g11970.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 38 | 59 | 6.942 |
| 82 | g11970.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 61 | 82 | 6.888 |
| 90 | g11970.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 84 | 105 | 7.596 |
| 85 | g11970.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 107 | 129 | 4.932 |
| 87 | g11970.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 130 | 151 | 4.932 |
| 91 | g11970.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 153 | 174 | 6.957 |
| 92 | g11970.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 176 | 198 | 7.712 |
| 94 | g11970.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 199 | 220 | 7.812 |
| 89 | g11970.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 222 | 243 | 6.888 |
| 83 | g11970.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 245 | 267 | 7.15 |
| 88 | g11970.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 268 | 289 | 5.887 |
| 93 | g11970.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 291 | 312 | 4.986 |
| 80 | g11970.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 314 | 335 | 5.741 |
| 86 | g11970.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 337 | 358 | 7.096 |
| 84 | g11970.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 360 | 382 | 6.326 |
| 98 | g11970.t1 | ProSiteProfiles | PS50106 | PDZ domain profile. | 660 | 747 | 22.355 |
| 95 | g11970.t1 | ProSiteProfiles | PS50106 | PDZ domain profile. | 831 | 921 | 22.114 |
| 96 | g11970.t1 | ProSiteProfiles | PS50106 | PDZ domain profile. | 1158 | 1248 | 21.431 |
| 97 | g11970.t1 | ProSiteProfiles | PS50106 | PDZ domain profile. | 1255 | 1347 | 18.315 |
| 41 | g11970.t1 | SMART | SM00364 | LRR_bac_2 | 36 | 55 | 85.0 |
| 42 | g11970.t1 | SMART | SM00369 | LRR_typ_2 | 37 | 58 | 92.0 |
| 49 | g11970.t1 | SMART | SM00369 | LRR_typ_2 | 59 | 81 | 2.2 |
| 61 | g11970.t1 | SMART | SM00365 | LRR_sd22_2 | 59 | 84 | 130.0 |
| 51 | g11970.t1 | SMART | SM00369 | LRR_typ_2 | 82 | 104 | 17.0 |
| 52 | g11970.t1 | SMART | SM00369 | LRR_typ_2 | 105 | 127 | 250.0 |
| 54 | g11970.t1 | SMART | SM00369 | LRR_typ_2 | 128 | 150 | 41.0 |
| 36 | g11970.t1 | SMART | SM00364 | LRR_bac_2 | 151 | 170 | 48.0 |
| 46 | g11970.t1 | SMART | SM00369 | LRR_typ_2 | 151 | 173 | 14.0 |
| 58 | g11970.t1 | SMART | SM00365 | LRR_sd22_2 | 151 | 173 | 94.0 |
| 35 | g11970.t1 | SMART | SM00364 | LRR_bac_2 | 174 | 193 | 230.0 |
| 44 | g11970.t1 | SMART | SM00369 | LRR_typ_2 | 174 | 196 | 0.26 |
| 57 | g11970.t1 | SMART | SM00365 | LRR_sd22_2 | 174 | 192 | 14.0 |
| 39 | g11970.t1 | SMART | SM00364 | LRR_bac_2 | 197 | 216 | 120.0 |
| 43 | g11970.t1 | SMART | SM00369 | LRR_typ_2 | 197 | 219 | 0.007 |
| 59 | g11970.t1 | SMART | SM00365 | LRR_sd22_2 | 197 | 225 | 300.0 |
| 37 | g11970.t1 | SMART | SM00364 | LRR_bac_2 | 220 | 239 | 25.0 |
| 48 | g11970.t1 | SMART | SM00369 | LRR_typ_2 | 220 | 242 | 6.7 |
| 47 | g11970.t1 | SMART | SM00369 | LRR_typ_2 | 243 | 265 | 1.7 |
| 60 | g11970.t1 | SMART | SM00365 | LRR_sd22_2 | 243 | 265 | 320.0 |
| 45 | g11970.t1 | SMART | SM00369 | LRR_typ_2 | 266 | 289 | 9.3 |
| 34 | g11970.t1 | SMART | SM00364 | LRR_bac_2 | 289 | 308 | 270.0 |
| 40 | g11970.t1 | SMART | SM00364 | LRR_bac_2 | 312 | 331 | 130.0 |
| 53 | g11970.t1 | SMART | SM00369 | LRR_typ_2 | 312 | 334 | 79.0 |
| 55 | g11970.t1 | SMART | SM00369 | LRR_typ_2 | 335 | 358 | 0.016 |
| 56 | g11970.t1 | SMART | SM00365 | LRR_sd22_2 | 335 | 357 | 110.0 |
| 38 | g11970.t1 | SMART | SM00364 | LRR_bac_2 | 358 | 377 | 210.0 |
| 50 | g11970.t1 | SMART | SM00369 | LRR_typ_2 | 359 | 381 | 120.0 |
| 31 | g11970.t1 | SMART | SM00228 | pdz_new | 668 | 747 | 1.2E-22 |
| 33 | g11970.t1 | SMART | SM00228 | pdz_new | 841 | 921 | 1.3E-21 |
| 30 | g11970.t1 | SMART | SM00228 | pdz_new | 1166 | 1248 | 1.3E-24 |
| 32 | g11970.t1 | SMART | SM00228 | pdz_new | 1264 | 1347 | 4.1E-17 |
| 9 | g11970.t1 | SUPERFAMILY | SSF52075 | Outer arm dynein light chain 1 | 10 | 122 | 2.22E-20 |
| 14 | g11970.t1 | SUPERFAMILY | SSF52058 | L domain-like | 105 | 392 | 3.91E-60 |
| 12 | g11970.t1 | SUPERFAMILY | SSF50156 | PDZ domain-like | 651 | 748 | 1.13E-25 |
| 11 | g11970.t1 | SUPERFAMILY | SSF50156 | PDZ domain-like | 809 | 927 | 9.33E-24 |
| 13 | g11970.t1 | SUPERFAMILY | SSF50156 | PDZ domain-like | 1151 | 1247 | 6.44E-26 |
| 10 | g11970.t1 | SUPERFAMILY | SSF50156 | PDZ domain-like | 1252 | 1348 | 9.07E-20 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
- This transcript has been annotated with K16175 (protein scribble)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
