Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative 6-phosphogluconolactonase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g11989 g11989.t17 TTS g11989.t17 20151800 20151800
chr_1 g11989 g11989.t17 isoform g11989.t17 20151867 20153547
chr_1 g11989 g11989.t17 exon g11989.t17.exon1 20151867 20152347
chr_1 g11989 g11989.t17 cds g11989.t17.CDS1 20151867 20152347
chr_1 g11989 g11989.t17 exon g11989.t17.exon2 20152413 20152536
chr_1 g11989 g11989.t17 cds g11989.t17.CDS2 20152413 20152536
chr_1 g11989 g11989.t17 exon g11989.t17.exon3 20152607 20152837
chr_1 g11989 g11989.t17 cds g11989.t17.CDS3 20152607 20152730
chr_1 g11989 g11989.t17 exon g11989.t17.exon4 20153513 20153547
chr_1 g11989 g11989.t17 TSS g11989.t17 NA NA

Sequences

>g11989.t17 Gene=g11989 Length=871
ATGTGTATAAGAGAAGAAAATTGAATATTAAAAAGAACATAGAATGAATAAAAAGAAAGA
ATCAACAGGTTGCTGTTGTTGTTATTGAGTTTCCAACTTTGTGCATCTCATCATTAAATT
TAATTTTTCTGTGATTATAAAAATGCCTGTGACACCTATAGTTTTGCACAATGAGGCATC
TGTTCTTAATAAATTTCAAGAATTAATTGAAGAAATTGCCAATGAATCAATTAATGATCA
CGATCATTTTTACGTTGGTTTTTCAGGCGGTTCTTTAGGAAAATATTTGTGTCAAATATT
ACCTAAAATCAAAACTGATTGGAGCAAGTGGACAATTTTTTTCTGCGATGAGCGTTATGT
TGATGAAAGTGATAACGAGTCAACATTTGGATTTTATAAAAACAATTTGATACCACTAGT
TGCATTGACTGAGCAGCAATTTATTTCAATCAATATTAACGATCCGATTGAAAAAGTTGC
TGATGATTATGAGAAAATAATAAGACAAAAATTTAATATGATTAAAGATGTTCCCTCATT
TGATTGTTTACTTCTTGGTGTTGGTCCAGATGGCCATACAGCTTCTTTATTTCCTGATCA
TCATATTTTGAATGAAAATGAACGTTTAATTACTTGGATCATTGATTCTCCTAAACCACC
ACCAAAAAGGATCACAATGACTTTTCCACTCATCAATAATGCAAAATATTCAATTTTTAC
TGTTCCCGGTAAAGGCAAGGCTGAAATCATTAAAAAAATATTTGAAGATAAAATTGATTT
CCCAGCTGCAAAAGTTAATTCTAAAAAAGTCATTTGGCTGCTCGATCAAGATTCTGCATC
CGAATGTTCAATTAAATTTGATACAGTCTAA

>g11989.t17 Gene=g11989 Length=242
MPVTPIVLHNEASVLNKFQELIEEIANESINDHDHFYVGFSGGSLGKYLCQILPKIKTDW
SKWTIFFCDERYVDESDNESTFGFYKNNLIPLVALTEQQFISININDPIEKVADDYEKII
RQKFNMIKDVPSFDCLLLGVGPDGHTASLFPDHHILNENERLITWIIDSPKPPPKRITMT
FPLINNAKYSIFTVPGKGKAEIIKKIFEDKIDFPAAKVNSKKVIWLLDQDSASECSIKFD
TV

Protein features from InterProScan

Transcript Database ID Name Start End E.value
6 g11989.t17 CDD cd01400 6PGL 20 227 0
4 g11989.t17 Gene3D G3DSA:3.40.50.1360 - 4 235 0
2 g11989.t17 PANTHER PTHR11054 6-PHOSPHOGLUCONOLACTONASE 9 235 0
1 g11989.t17 Pfam PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase 11 225 0
3 g11989.t17 SUPERFAMILY SSF100950 NagB/RpiA/CoA transferase-like 6 236 0
5 g11989.t17 TIGRFAM TIGR01198 pgl: 6-phosphogluconolactonase 7 232 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006098 pentose-phosphate shunt BP
GO:0017057 6-phosphogluconolactonase activity MF
GO:0005975 carbohydrate metabolic process BP

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed