Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative 6-phosphogluconolactonase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g11989 g11989.t7 TTS g11989.t7 20151800 20151800
chr_1 g11989 g11989.t7 isoform g11989.t7 20151867 20152730
chr_1 g11989 g11989.t7 exon g11989.t7.exon1 20151867 20152347
chr_1 g11989 g11989.t7 cds g11989.t7.CDS1 20151867 20152347
chr_1 g11989 g11989.t7 exon g11989.t7.exon2 20152413 20152536
chr_1 g11989 g11989.t7 cds g11989.t7.CDS2 20152413 20152536
chr_1 g11989 g11989.t7 exon g11989.t7.exon3 20152603 20152730
chr_1 g11989 g11989.t7 cds g11989.t7.CDS3 20152603 20152651
chr_1 g11989 g11989.t7 TSS g11989.t7 20152795 20152795

Sequences

>g11989.t7 Gene=g11989 Length=733
ATGCCTGTGACACCTATAGTTTTGCACAATGAGGCATCTGTTCTTAATAAATTTCAAGAA
TTAATTGAAGAAATTGCCAATGAATCAATTAATGATCACGATCATTTTTACGTTGGTTTT
TCAGGTATGCGGTTCTTTAGGAAAATATTTGTGTCAAATATTACCTAAAATCAAAACTGA
TTGGAGCAAGTGGACAATTTTTTTCTGCGATGAGCGTTATGTTGATGAAAGTGATAACGA
GTCAACATTTGGATTTTATAAAAACAATTTGATACCACTAGTTGCATTGACTGAGCAGCA
ATTTATTTCAATCAATATTAACGATCCGATTGAAAAAGTTGCTGATGATTATGAGAAAAT
AATAAGACAAAAATTTAATATGATTAAAGATGTTCCCTCATTTGATTGTTTACTTCTTGG
TGTTGGTCCAGATGGCCATACAGCTTCTTTATTTCCTGATCATCATATTTTGAATGAAAA
TGAACGTTTAATTACTTGGATCATTGATTCTCCTAAACCACCACCAAAAAGGATCACAAT
GACTTTTCCACTCATCAATAATGCAAAATATTCAATTTTTACTGTTCCCGGTAAAGGCAA
GGCTGAAATCATTAAAAAAATATTTGAAGATAAAATTGATTTCCCAGCTGCAAAAGTTAA
TTCTAAAAAAGTCATTTGGCTGCTCGATCAAGATTCTGCATCCGAATGTTCAATTAAATT
TGATACAGTCTAA

>g11989.t7 Gene=g11989 Length=217
MNQLMITIIFTLVFQVCGSLGKYLCQILPKIKTDWSKWTIFFCDERYVDESDNESTFGFY
KNNLIPLVALTEQQFISININDPIEKVADDYEKIIRQKFNMIKDVPSFDCLLLGVGPDGH
TASLFPDHHILNENERLITWIIDSPKPPPKRITMTFPLINNAKYSIFTVPGKGKAEIIKK
IFEDKIDFPAAKVNSKKVIWLLDQDSASECSIKFDTV

Protein features from InterProScan

Transcript Database ID Name Start End E.value
11 g11989.t7 CDD cd01400 6PGL 18 202 1.33734E-71
5 g11989.t7 Gene3D G3DSA:3.40.50.1360 - 10 210 1.8E-60
2 g11989.t7 PANTHER PTHR11054 6-PHOSPHOGLUCONOLACTONASE 18 210 1.7E-49
1 g11989.t7 Pfam PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase 18 200 8.0E-55
7 g11989.t7 Phobius SIGNAL_PEPTIDE Signal peptide region 1 18 -
8 g11989.t7 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 3 -
9 g11989.t7 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 4 14 -
10 g11989.t7 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 15 18 -
6 g11989.t7 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 19 217 -
3 g11989.t7 SUPERFAMILY SSF100950 NagB/RpiA/CoA transferase-like 17 211 7.67E-54
4 g11989.t7 SignalP_EUK SignalP-noTM SignalP-noTM 1 21 -
12 g11989.t7 TIGRFAM TIGR01198 pgl: 6-phosphogluconolactonase 18 207 5.6E-56

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006098 pentose-phosphate shunt BP
GO:0017057 6-phosphogluconolactonase activity MF
GO:0005975 carbohydrate metabolic process BP

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed