Gene loci information

Transcript annotation

  • This transcript has been annotated as Myosin heavy chain, muscle.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g12034 g12034.t1 TSS g12034.t1 20563851 20563851
chr_1 g12034 g12034.t1 isoform g12034.t1 20563981 20570454
chr_1 g12034 g12034.t1 exon g12034.t1.exon1 20563981 20564184
chr_1 g12034 g12034.t1 cds g12034.t1.CDS1 20563981 20564184
chr_1 g12034 g12034.t1 exon g12034.t1.exon2 20564242 20564385
chr_1 g12034 g12034.t1 cds g12034.t1.CDS2 20564242 20564385
chr_1 g12034 g12034.t1 exon g12034.t1.exon3 20564454 20564831
chr_1 g12034 g12034.t1 cds g12034.t1.CDS3 20564454 20564831
chr_1 g12034 g12034.t1 exon g12034.t1.exon4 20564889 20565051
chr_1 g12034 g12034.t1 cds g12034.t1.CDS4 20564889 20565051
chr_1 g12034 g12034.t1 exon g12034.t1.exon5 20565114 20565217
chr_1 g12034 g12034.t1 cds g12034.t1.CDS5 20565114 20565217
chr_1 g12034 g12034.t1 exon g12034.t1.exon6 20565278 20565685
chr_1 g12034 g12034.t1 cds g12034.t1.CDS6 20565278 20565685
chr_1 g12034 g12034.t1 exon g12034.t1.exon7 20565746 20565916
chr_1 g12034 g12034.t1 cds g12034.t1.CDS7 20565746 20565916
chr_1 g12034 g12034.t1 exon g12034.t1.exon8 20565974 20566960
chr_1 g12034 g12034.t1 cds g12034.t1.CDS8 20565974 20566960
chr_1 g12034 g12034.t1 exon g12034.t1.exon9 20567026 20567235
chr_1 g12034 g12034.t1 cds g12034.t1.CDS9 20567026 20567235
chr_1 g12034 g12034.t1 exon g12034.t1.exon10 20567293 20568179
chr_1 g12034 g12034.t1 cds g12034.t1.CDS10 20567293 20568179
chr_1 g12034 g12034.t1 exon g12034.t1.exon11 20568236 20570396
chr_1 g12034 g12034.t1 cds g12034.t1.CDS11 20568236 20570396
chr_1 g12034 g12034.t1 exon g12034.t1.exon12 20570452 20570454
chr_1 g12034 g12034.t1 cds g12034.t1.CDS12 20570452 20570454
chr_1 g12034 g12034.t1 TTS g12034.t1 NA NA

Sequences

>g12034.t1 Gene=g12034 Length=5820
ATGCCGAAGGTTGTTAAGCAGGAAGGTGAAGATCCAGATCCCTCTGAGTGGTTGTATGTG
TCACTCGAGGCTAAAAGACAAAATGCAGCTAAGCCATACGATGGTAAGACTGCTTGCTGG
GTTCCCGATGAAAAATTGGGTTATGTTTTGGGTGAAATCAAAGGACAAAAGGGTGACTTG
ATCACCGTTGCTGTCGGTAGTGAGGTCAAAGATTGGAAACCAGAACAAGTAACGCAAGTC
AACCCTCCAAAATACGAAATGGCTGAGGATATGTCCAACTTGACATATCTTAACGATGCC
TCAGTTCTTCATAACTTGAGACAACGTTATCTCAATAAACTTATTTATACCTACTCTGGC
CTCTTCTGTATTGTAATCAATCCTTACAAACGTTGGCCATTGTATACTAATCGTGTTGCC
AAAATGTACCGTGGCAAGCGTAAGAATGAAGTTCCACCTCATCTTTTCTCCATCTCTGAT
GGTGCTTATGTAAACATGTTAACTGACAAACAAAATCAGTCCATGTTGATTACTGGTGAG
TCAGGAGCAGGTAAAACTGAAAACACGAAGAAGGTTATTGCCTACTTCGCCACTATTGGT
GCTGGTAAGAAAGATCCATCACAAGAAGGCAAGGGTTCACTTGAAGATCAAATTGTCCAG
ACCAATCCCGTACTTGAAGCTTTCGGTAATGCCAAGACCGTCCGTAATGATAACTCATCA
CGTTTCGGTAAATTCATCCGTATTCACTTCTCGGGCTCTGGTAAATTGGCTGGTGCTGAT
ATTGAGACTTACTTGTTGGAAAAGGCTCGTGTCATCTCACAACAAACATTGGAACGTTCA
TATCACATTTTCTACCAAATGATGTCCGGCTCAGTTCCAGGCCTTAAAGAAATGTGCTGC
CTCTCAAACAACATCTATGACTACGTTAATGTGTCACAGGGTAAAATTACAATCCCTAAT
GTTGATGACGGCGAGGAATGTACTCTTACAGATCAAGCCTTCGATATCTTGGGTTTCTCA
CAACAAGAGAAGGATGATATCTATAAGATTACTGCTGCAACAATGCATATGGGTGCTATG
CAATTCAAACAAAGAGGTCGCGAAGAACAGGCTGAAGCTGATGGTACTGAAGCTGGTGAG
AAAGTCGCCAAATTGCTCGGTGTTGACACACAAGATCTCTATAAGAACTTGCTTAAGCCA
CGTATTAAAGTCGGTAACGAGTTCGTCACACAAGGTCGTAACAAAGATCAAGTATACAAC
TCAGTTGGTGCCCTTTGCAAAGGTATCTTCGATCGTATCTTTAGATACTTGGTACAAAAG
TGTAATGCTACACTTGATACCAAACAAAAGCGTGCATCCTTCATTGGTGTATTGGATATT
GCCGGTTTCGAAATTTTCGACTTCAACGGTTTTGAGCAACTTTGTATTAACTTTACCAAT
GAAAAGTTGCAACAATTCTTCAACCATCACATGTTCGTCTTGGAACAGGAAGAATATAAG
AAGGAAGGTATTAACTGGGCTTTCATTGATTTCGGTATGGATTTGTTGGCTTGTGTCGAA
TTGATTGAAAAGCCTATGGGTATCTTGTCAATTCTTGAAGAAGAATCTATGTTCCCAAAA
GCCACCGATCAAACATTTGCTGAAAAGTTGATGACCAATCACTTGGGCAAATCGAAGCCA
TTCATGAAGCCAAAACCACCAAAGCCTGGCATCCAAGCTGGTCACTTTGCTATTGCTCAC
TACGCTGGTATTGTATCATATAACATTACCGGTTGGTTGGAAAAGAACAAGGATCCATTG
AATGACACTGTCGTTGATCAATTCAAGAAGGGATCAAATCAACTTTTAGTTGATATCTTT
GCTGATCATCCAGGTCAATCTGGTGCTCCACCAGGTGGCGATGCTGGCGGCAAGGGTGGT
GGTCGTGGAAAGAAAGGTGGTGGTTTCGCTACTGTCTCATCAGCCTACAAAGAACAATTG
AACAATTTAATGACAACATTGCGTTCAACACATCCTCACTTCGTCCGTTGTATTATTCCA
AATGAAATCAAACAGACTGGTCTTATTGATGCCAAACTTGTCATGCATCAACTCACCTGT
AATGGTGTACTTGAGGGTATTCGTATCTGTCGTAAAGGTTTCCCTAACAGAATGAACTAT
CCTGATTTCAAAGTGCGTTACAAAATCTTGGCACCAGCAATTATGGATGCTGAACCAAAT
CCAAAGATTGCCACTGAGAAATGTTTGGAAAGCACAACACTTGATCCAGACTTTTATCGT
ATTGGTCACACTAAAGTATTCTTCCGTGCTGGTGTCTTGGGTCAACTAGAAGAATTCCGT
GATGAACGTCTTAGCCGTATCATGTCATGGATGCAAGCATGGACCCGTGGTTACCTCGTT
CGTAAGAACTTCAAGAAGTTGCAAGAACAACGTCTTGCACTCGCCGTTGTCCAACGTGCC
TTGCGTAGATATCTTAAACTCCGCACTTGGCCATGGTGGAAGATGTGGCAAAAACTTAAG
CCACTCCTCAATGCTTCACGTGTTGAAGATCAAATTGCTAAACTCGAAGAAAAAGCACAA
AAAGCAACAGAAGCTTTGGAAAAAGAAGAGAAAGCTCGTAGAGAATTGGAAGCTCTTAAC
AGCAAATTGCAAGCTGAAAAGATTGCTCTTTTGGATTCATTGTCTGGTGAAAAAGGTGCC
CTTCAAGATTATCAAGAAAAATGTGCCAAACTCACAGCACAAAAGAATGATTTGGACAAT
CAATTGCGTGATACTCAAGAGCGTTTAGCTCAAGAAGAAGATGCCCGCAATCAATTGTTC
CAGTCAAAGAAGAAGTGCGAACAAGAAATTGCTGGTTTGAAGAAGGACTTGGAAGACTTG
GAACTCTCAATTCAAAAATCAGAGCAAGACAAGTCATCAAAGGACCATCAAATCCGCAAT
TTGAATGATGAAATTGCCCATCAGGATGAACTCATCAACAAATTGAACAAAGAAAAGAAA
ATGCAAGGTGAGACCAATCAAAAGACTGCCGAGGAATTGCAAGCTGCTGAAGACAAAGTC
AACCATTTGAACAAAGTCAAGGCCAAGCTTGAACAGACCCTCGATGAATTGGAAGACTCA
CTTGAACGTGAGAAGAAACTCCGTGGTGATGTTGAAAAAGGCAAACGTAAAGTTGAGGGT
GACTTAAAACTCACACAAGAGGCTGTGAATGATTTAGAGCGTAATAAGAAGGAACTCGAA
CAAACCATTCAACGCAAGGACAAGGAAATCTCATCACTTACTGCTAAGTTAGAAGATGAG
CAATCTTTGGTCGGCAAATTGCAAAAACAAATCAAGGAACTTCAATCACGCATTGAAGAA
CTTGAAGAAGAAGTCGAAGCTGAACGTCAAGCTCGTGCTAAGGCTGAAAAACAACGTGCT
GATTTGGCTCGTGAATTGGAAGAATTGGGTGAACGTCTCGAAGAAGCTGGTGGCGCTACA
TCAGCTCAAATTGAACTCAACAAGAAGCGTGAAGCTGAATTGGCCAAATTGCGTCGTGAT
TTGGAAGAAGCCAATATTCAACATGAAGGCACATTGGCTAACTTACGCAAGAAGCACAAT
GATGCTGTTGCTGAGATGGCTGAACAAGTCGATCAACTTAACAAATTGAAGACCAAGGCT
GAACATGATCGCGCAAATATGTACAATGAATTGAACAACACTCGTGCTGCATGTGATCAA
ATCTCACGTGAAAAGGCTGCACAAGAGAAGATCTCTAAGCAAATGCAACACACACTCAAT
GAAGTTCAAGGCAAATTGGAAGAAACCAACCGTACTTTGAATGACTTTGATGCACAAAAG
AAGAAGTTGTCAATTGAAAACTCAGATCTCCTTCGTCAATTAGAAGAAGCTGAATCACAA
GTTTCACAATTGTCAAAGATCAAGATCTCACTAACACAACAATTGGAAGATACCAAGCGT
CTTGCCGACGAAGAGGCTCGTGAACGTGCCACACTTTTGGGCAAATTCCGCAATTTGGAA
CATGACTTGGATAACTTGCGTGAACAAGTTGAGGAAGAGGCTGAAGGCAAAGCTGATATG
CAACGTCAACTCAGCAAAGTCAATGCCGAATGTCAATTGTGGCGTGCCAAGTACGAGTCA
GAAGGTGTTGCTCGCGCTGAAGAATTGGAAGAAGCCAAGCGCAAGCTTCAAGCACGTCTT
GGCGAGGCAGAAGAGACAATCGAGTCACTCAACCAAAAGTGTGTTGCTTTGGAAAAGACC
AAGCAACGTCTTGCCACAGAAGTCGAAGACTTGCAATTGGAAGTCGATCGTGCCTCAGCT
ATTGCCAATGCCGCCGAGAAGAAGCAAAAGGCATTTGACAAGATTATTGGCGAATGGAAA
CTCAAAGTCGACGATCTCGCTGCCGAGCTTGATGCTTCACAGAAAGAGTGCCGCAACTAC
TCAACCGAACTCTTCCGTCTCAAGGGTGCCTACGAAGAAGGACAAGAACAATTGGAAGCT
GTCCGTCGTGAAAACAAGAATCTTGCTGATGAAGTCAAGGACTTGCTTGATCAAATCGGT
GAGGGTGGTCGCAACATTCACGAAATTGAAAAGGCACGTAAACGCCTTGAAGTTGAGAAG
GATGAATTGCAAGCCGCTCTTGAGGAAGCTGAAGCTGCCTTGGAACAAGAAGAGAACAAG
GTGCTCCGCGCTCAACTCGAATTGTCACAAGTTCGTCAAGAAATTGATAGACGCATCCAA
GAGAAGGAAGAAGAGTTCGAGAACACACGCAAGAATCACCAACGTGCCCTTGACTCAATG
CAAGCTTCACTCGAAGCCGAAGCTAAAGGTAAGGCTGAGGCTCTTCGCATGAAGAAGAAG
TTAGAGGCTGATATCAATGAGCTTGAAATTGCTTTGGATCATGCCAACAAGGCCAACGCT
GAAGCACAAAAGAACATCAAACGTTATCAACAACAACTCAAAGACTTGCAAACTGCTCTT
GAAGAAGAGCAACGCGCACGTGATGATGCTCGTGAACAACTTGGAATCTCAGAACGTCGT
GGTAATGCCCTTCAAAACGAATTGGAGGAATCACGTACACTTTTGGAACAAGCTGATCGC
GGTCGTCGTCAAGCTGAGCAAGAATTGGGAGATGCTCATGAACAGCTCAATGAACTTTCA
GCCCAAAATGCTTCAGTCGCTGCTGCTAAGAGAAAGTTGGAAGCCGAATTACAAACACTC
CACTCAGACTTGGATGAATTATTGAATGAAGCCAAGAACTCAGAAGAGAAGGCCAAGAAA
GCAATGGTTGATGCTGCCCGTCTTGCTGATGAACTTCGTGCTGAACAAGATCATGCTCAG
ACACAAGAGAAATTGCGCAAGGCTCTTGAGACTCAAATCAAGGAATTACAAGTTCGTTTG
GATGATGCTGAGACCAGTGCACTTAAGGGAGGCAAGAAAGCTATTCAAAAACTCGAACAA
CGTGTACGAGAGTTGGAGAATGAATTGGACGGCGAGCAACGCAGACATGCTGATGCTCAA
AAGAATCTCCGCAAGGGTGAACGTCGCATTAAGGAACTTAGCTTCCAATCAGAAGAAGAT
CGCAAAAATCATGAACGTATGCAAGACTTGGTTGACAAATTACAACAAAAGATCAAGACA
TACAAGAGACAAATTGAAGAAGCCGAAGAAATTGCTGCTCTCAACTTGGCTAAATTCCGT
AAAGCACAACAAGAAGTTGAAGAATCAGAGGAACGCGCTGATTTGGCCGAACAAGCTATC
AGTAAATTCAGAGCCAAGGGACGTGGAGGCTCAGTCGTTCGCGATGCCAGCGTAGTGTAA

>g12034.t1 Gene=g12034 Length=1939
MPKVVKQEGEDPDPSEWLYVSLEAKRQNAAKPYDGKTACWVPDEKLGYVLGEIKGQKGDL
ITVAVGSEVKDWKPEQVTQVNPPKYEMAEDMSNLTYLNDASVLHNLRQRYLNKLIYTYSG
LFCIVINPYKRWPLYTNRVAKMYRGKRKNEVPPHLFSISDGAYVNMLTDKQNQSMLITGE
SGAGKTENTKKVIAYFATIGAGKKDPSQEGKGSLEDQIVQTNPVLEAFGNAKTVRNDNSS
RFGKFIRIHFSGSGKLAGADIETYLLEKARVISQQTLERSYHIFYQMMSGSVPGLKEMCC
LSNNIYDYVNVSQGKITIPNVDDGEECTLTDQAFDILGFSQQEKDDIYKITAATMHMGAM
QFKQRGREEQAEADGTEAGEKVAKLLGVDTQDLYKNLLKPRIKVGNEFVTQGRNKDQVYN
SVGALCKGIFDRIFRYLVQKCNATLDTKQKRASFIGVLDIAGFEIFDFNGFEQLCINFTN
EKLQQFFNHHMFVLEQEEYKKEGINWAFIDFGMDLLACVELIEKPMGILSILEEESMFPK
ATDQTFAEKLMTNHLGKSKPFMKPKPPKPGIQAGHFAIAHYAGIVSYNITGWLEKNKDPL
NDTVVDQFKKGSNQLLVDIFADHPGQSGAPPGGDAGGKGGGRGKKGGGFATVSSAYKEQL
NNLMTTLRSTHPHFVRCIIPNEIKQTGLIDAKLVMHQLTCNGVLEGIRICRKGFPNRMNY
PDFKVRYKILAPAIMDAEPNPKIATEKCLESTTLDPDFYRIGHTKVFFRAGVLGQLEEFR
DERLSRIMSWMQAWTRGYLVRKNFKKLQEQRLALAVVQRALRRYLKLRTWPWWKMWQKLK
PLLNASRVEDQIAKLEEKAQKATEALEKEEKARRELEALNSKLQAEKIALLDSLSGEKGA
LQDYQEKCAKLTAQKNDLDNQLRDTQERLAQEEDARNQLFQSKKKCEQEIAGLKKDLEDL
ELSIQKSEQDKSSKDHQIRNLNDEIAHQDELINKLNKEKKMQGETNQKTAEELQAAEDKV
NHLNKVKAKLEQTLDELEDSLEREKKLRGDVEKGKRKVEGDLKLTQEAVNDLERNKKELE
QTIQRKDKEISSLTAKLEDEQSLVGKLQKQIKELQSRIEELEEEVEAERQARAKAEKQRA
DLARELEELGERLEEAGGATSAQIELNKKREAELAKLRRDLEEANIQHEGTLANLRKKHN
DAVAEMAEQVDQLNKLKTKAEHDRANMYNELNNTRAACDQISREKAAQEKISKQMQHTLN
EVQGKLEETNRTLNDFDAQKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTQQLEDTKR
LADEEARERATLLGKFRNLEHDLDNLREQVEEEAEGKADMQRQLSKVNAECQLWRAKYES
EGVARAEELEEAKRKLQARLGEAEETIESLNQKCVALEKTKQRLATEVEDLQLEVDRASA
IANAAEKKQKAFDKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEGQEQLEA
VRRENKNLADEVKDLLDQIGEGGRNIHEIEKARKRLEVEKDELQAALEEAEAALEQEENK
VLRAQLELSQVRQEIDRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKK
LEADINELEIALDHANKANAEAQKNIKRYQQQLKDLQTALEEEQRARDDAREQLGISERR
GNALQNELEESRTLLEQADRGRRQAEQELGDAHEQLNELSAQNASVAAAKRKLEAELQTL
HSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQVRL
DDAETSALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKGERRIKELSFQSEED
RKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQEVEESEERADLAEQAI
SKFRAKGRGGSVVRDASVV

Protein features from InterProScan

Transcript Database ID Name Start End E.value
42 g12034.t1 CDD cd14909 MYSc_Myh1_insects_crustaceans 100 769 0.0
39 g12034.t1 Coils Coil Coil 845 889 -
41 g12034.t1 Coils Coil Coil 894 998 -
31 g12034.t1 Coils Coil Coil 1006 1050 -
40 g12034.t1 Coils Coil Coil 1055 1159 -
36 g12034.t1 Coils Coil Coil 1167 1230 -
35 g12034.t1 Coils Coil Coil 1252 1377 -
37 g12034.t1 Coils Coil Coil 1386 1448 -
38 g12034.t1 Coils Coil Coil 1456 1518 -
33 g12034.t1 Coils Coil Coil 1526 1603 -
34 g12034.t1 Coils Coil Coil 1611 1680 -
29 g12034.t1 Coils Coil Coil 1688 1806 -
32 g12034.t1 Coils Coil Coil 1808 1891 -
30 g12034.t1 Coils Coil Coil 1899 1926 -
22 g12034.t1 Gene3D G3DSA:2.30.30.360 Myosin S1 fragment 42 80 2.0E-274
26 g12034.t1 Gene3D G3DSA:3.40.850.10 Kinesin 81 711 2.0E-274
23 g12034.t1 Gene3D G3DSA:1.20.120.720 - 339 642 2.0E-274
28 g12034.t1 Gene3D G3DSA:1.20.58.530 - 463 669 2.0E-274
19 g12034.t1 Gene3D G3DSA:3.30.70.3240 - 713 781 2.0E-23
21 g12034.t1 Gene3D G3DSA:4.10.270.10 Myosin 782 840 3.5E-22
27 g12034.t1 Gene3D G3DSA:1.20.5.340 - 841 966 3.3E-29
20 g12034.t1 Gene3D G3DSA:1.20.5.1050 - 968 1077 4.7E-6
25 g12034.t1 Gene3D G3DSA:1.20.5.370 - 1540 1577 2.9E-7
24 g12034.t1 Gene3D G3DSA:1.20.5.370 - 1578 1625 2.8E-11
45 g12034.t1 MobiDBLite mobidb-lite consensus disorder prediction 1662 1688 -
46 g12034.t1 MobiDBLite mobidb-lite consensus disorder prediction 1662 1676 -
47 g12034.t1 MobiDBLite mobidb-lite consensus disorder prediction 1827 1848 -
4 g12034.t1 PANTHER PTHR45615:SF12 MYOSIN-4 17 1913 0.0
5 g12034.t1 PANTHER PTHR45615 MYOSIN HEAVY CHAIN, NON-MUSCLE 17 1913 0.0
6 g12034.t1 PRINTS PR00193 Myosin heavy chain signature 116 135 4.1E-67
9 g12034.t1 PRINTS PR00193 Myosin heavy chain signature 172 197 4.1E-67
7 g12034.t1 PRINTS PR00193 Myosin heavy chain signature 223 250 4.1E-67
10 g12034.t1 PRINTS PR00193 Myosin heavy chain signature 454 482 4.1E-67
8 g12034.t1 PRINTS PR00193 Myosin heavy chain signature 508 536 4.1E-67
3 g12034.t1 Pfam PF02736 Myosin N-terminal SH3-like domain 36 64 1.7E-9
1 g12034.t1 Pfam PF00063 Myosin head (motor domain) 89 769 1.1E-273
2 g12034.t1 Pfam PF01576 Myosin tail 847 1926 3.1E-161
50 g12034.t1 ProSiteProfiles PS51844 Myosin N-terminal SH3-like domain profile. 34 82 13.591
48 g12034.t1 ProSiteProfiles PS51456 Myosin motor domain profile. 86 781 243.956
49 g12034.t1 ProSiteProfiles PS50096 IQ motif profile. 784 813 8.718
44 g12034.t1 SMART SM00242 MYSc_2a 80 782 0.0
43 g12034.t1 SMART SM00015 iq_5 783 805 4.5E-4
17 g12034.t1 SUPERFAMILY SSF50084 Myosin S1 fragment, N-terminal domain 34 66 1.26E-7
18 g12034.t1 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 64 839 3.64E-279
11 g12034.t1 SUPERFAMILY SSF90257 Myosin rod fragments 841 966 6.67E-22
14 g12034.t1 SUPERFAMILY SSF90257 Myosin rod fragments 963 1074 7.85E-22
16 g12034.t1 SUPERFAMILY SSF90257 Myosin rod fragments 1069 1185 8.89E-6
15 g12034.t1 SUPERFAMILY SSF90257 Myosin rod fragments 1238 1353 7.72E-24
13 g12034.t1 SUPERFAMILY SSF90257 Myosin rod fragments 1433 1554 2.22E-10
12 g12034.t1 SUPERFAMILY SSF90257 Myosin rod fragments 1632 1747 5.75E-9

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0051015 actin filament binding MF
GO:0005524 ATP binding MF
GO:0005515 protein binding MF
GO:0016459 myosin complex CC
GO:0003774 cytoskeletal motor activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values