General information for g12065.t5
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Protein CWC15-like protein.
Parent gene
- The parent gene g12065 is located on chr_1: 20704216..20705152 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g12065 | g12065.t5 | TTS | g12065.t5 | 20704197 | 20704197 |
| chr_1 | g12065 | g12065.t5 | isoform | g12065.t5 | 20704216 | 20705102 |
| chr_1 | g12065 | g12065.t5 | exon | g12065.t5.exon1 | 20704216 | 20704433 |
| chr_1 | g12065 | g12065.t5 | cds | g12065.t5.CDS1 | 20704416 | 20704433 |
| chr_1 | g12065 | g12065.t5 | exon | g12065.t5.exon2 | 20704567 | 20704738 |
| chr_1 | g12065 | g12065.t5 | cds | g12065.t5.CDS2 | 20704567 | 20704738 |
| chr_1 | g12065 | g12065.t5 | exon | g12065.t5.exon3 | 20704802 | 20704939 |
| chr_1 | g12065 | g12065.t5 | cds | g12065.t5.CDS3 | 20704802 | 20704932 |
| chr_1 | g12065 | g12065.t5 | exon | g12065.t5.exon4 | 20704994 | 20705102 |
| chr_1 | g12065 | g12065.t5 | TSS | g12065.t5 | 20705143 | 20705143 |
Sequences
>g12065.t5 Gene=g12065 Length=637
TCTGTAAATTTGCAAATAAAAGCGTTTGTATTTTATAAAACAATTTGCAAATAGATTTAT
TATAATAAACATAGAACATACTTTAAACTAAATATTAATTTTCATTAAAAGAAAAAATGA
CGACTGCAGCACGTCCAACTTTTGATACAGCTAAAGGAGGATCTAATAGAGGAGAGAAAG
ATCTTTCTGCATTATCCAAACAATATTCATCACGTGATTTGCCTTCACATACAAAACTAA
AATACAGAGAAACTGGACAAGGAACAAATGATGAAATTCGCAGTCGTGACCTCCGTAAAG
AATTAGAAGAGCGTGAAAGTTCAAGTAAAACATCAAAACAATCTGCAGTTGTTCGTCGTG
CACTCGAAGCTAACACAAAACGTCAAAAATTGGAACAAAACCCAGATGCAGACGATCCTA
GGAACGAATACGCTTAGAGAATATTCTTAGTGGCAACCCGCTCTTAAATTATTCTGCTGG
TACATCAAAAGGAAATACTAAAGTGAAGAGACGTTGGAATGATGACGTAGTGTTTAAAAA
TTGTGCACGCACTGAAGTAGACAAAGGTGACACCTTCATTAATGACTCATTGCGCTCGGA
ATTTCACAAAAAATTCATGGAAAAATATATTAAATAA
>g12065.t5 Gene=g12065 Length=106
MTTAARPTFDTAKGGSNRGEKDLSALSKQYSSRDLPSHTKLKYRETGQGTNDEIRSRDLR
KELEERESSSKTSKQSAVVRRALEANTKRQKLEQNPDADDPRNEYA
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g12065.t5 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 106 | - |
| 6 | g12065.t5 | MobiDBLite | mobidb-lite | consensus disorder prediction | 35 | 71 | - |
| 4 | g12065.t5 | MobiDBLite | mobidb-lite | consensus disorder prediction | 84 | 106 | - |
| 2 | g12065.t5 | PANTHER | PTHR12718 | CELL CYCLE CONTROL PROTEIN CWF15 | 1 | 101 | 1.5E-25 |
| 3 | g12065.t5 | PANTHER | PTHR12718:SF2 | SPLICEOSOME-ASSOCIATED PROTEIN CWC15 HOMOLOG | 1 | 101 | 1.5E-25 |
| 1 | g12065.t5 | Pfam | PF04889 | Cwf15/Cwc15 cell cycle control protein | 1 | 95 | 9.7E-25 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005681 | spliceosomal complex | CC |
| GO:0000398 | mRNA splicing, via spliceosome | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed