General information for g12101.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g12101 is located on chr_1: 20937721..20938129 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g12101 | g12101.t3 | TTS | g12101.t3 | 20921618 | 20921618 |
| chr_1 | g12101 | g12101.t3 | isoform | g12101.t3 | 20922398 | 20923451 |
| chr_1 | g12101 | g12101.t3 | exon | g12101.t3.exon1 | 20922398 | 20923451 |
| chr_1 | g12101 | g12101.t3 | cds | g12101.t3.CDS1 | 20923087 | 20923398 |
| chr_1 | g12101 | g12101.t3 | TSS | g12101.t3 | NA | NA |
Sequences
>g12101.t3 Gene=g12101 Length=1054
TTGGTAATGAATGTCGTCAGAGACGTGGAAGTGTCGGTTCATTAGATAGTGGAATGTCAA
TATCTTTTCAATCAAATTCTACTAATAATAATAATGCTTCCAATTGCAAAAATCCTGAAA
GCTCAACAACATCTACTACAAATATAAATACTTATGTATCAACTCAAACAAGTGCGATAG
TACAACGTCAGCCGTCGCAGCAACAGCATGCTAATGGTAATAGTCACCCAATGATGATTC
CTCCACTGCTTCCAAATAGTGCATTATATCAGTACAATAATGATCAAATGGTACATATGC
ATGAATTATATGAGGAACACACTCATACTCGTTCACATGTTGATGGACGATCAACGGATG
TTTAAAATAAAAACGAGAGTGGAAAATTAATTTAATCAAAATTAATGATTAGAATTCATT
TAATATGATGAAAATGATAAACAAAATCGTGTGTGTCATGTTTAAATATTTTTTATAAAT
TCATTAAAGTCGAATTCCAAAGTTCCAAAGATTTGTTCAGCTTCCTTTATATGTTTATAT
TTTTTTGATTGCAAAGAGTTTTTCTTGTTTTGTTATTTTTTGTTTCGTGTGGTCATATAT
AAATTTAATGTATGTAATGCTAAAAGTAAGTAATGCAAAAATTTCAATAATTATAACATA
TGATAATGAATCAATAACTTAAAATGGCTCATTTAGAAAATTTACTCACTCACACACAGA
CTATATATTTAAATGGATGATCTCATCAGTAGATACTTTCCTTAAATCTAACAAAATCTT
ACAAAATTGTAAAGTGAGAAAAGAAAATACTAAATCCTTTTTATCAATATCAACTATTAA
ATCATTTCTGTCGATATACTTGTTTGATGACACAAAATTTAATTACAAAAAAAAGTAATT
GGAGGATAACAAAATGATATACAATACAATAATATGTACTAATAAAGAAAAGTGAGATAA
CACATGACTATGATTGAAAAGAATAAGAGAAAAAATAATTAAAAAATGTAGAATCTTATT
TTTTATACCGAAAAAATTATAAAAAGTCGATAAC
>g12101.t3 Gene=g12101 Length=103
MSISFQSNSTNNNNASNCKNPESSTTSTTNINTYVSTQTSAIVQRQPSQQQHANGNSHPM
MIPPLLPNSALYQYNNDQMVHMHELYEEHTHTRSHVDGRSTDV
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g12101.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 58 | - |
| g12101.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 57 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
