General information for g12155.t13
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Phosphopantothenoylcysteine decarboxylase.
Parent gene
- The parent gene g12155 is located on chr_1: 21412490..21413466 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g12155 | g12155.t13 | TTS | g12155.t13 | 21412283 | 21412283 |
| chr_1 | g12155 | g12155.t13 | isoform | g12155.t13 | 21412340 | 21413466 |
| chr_1 | g12155 | g12155.t13 | exon | g12155.t13.exon1 | 21412340 | 21412431 |
| chr_1 | g12155 | g12155.t13 | cds | g12155.t13.CDS1 | 21412340 | 21412431 |
| chr_1 | g12155 | g12155.t13 | exon | g12155.t13.exon2 | 21412491 | 21412866 |
| chr_1 | g12155 | g12155.t13 | cds | g12155.t13.CDS2 | 21412491 | 21412866 |
| chr_1 | g12155 | g12155.t13 | exon | g12155.t13.exon3 | 21412957 | 21413466 |
| chr_1 | g12155 | g12155.t13 | cds | g12155.t13.CDS3 | 21412957 | 21413067 |
| chr_1 | g12155 | g12155.t13 | TSS | g12155.t13 | 21413466 | 21413466 |
Sequences
>g12155.t13 Gene=g12155 Length=978
GTTTATAAAAATTTTTTTTTTTCGTAAAATGAAAGAATAAAAATATTTTTTAAAAATTCC
CGTTGTTACTCTCAATAAATTATTCATAGTTTAGTATAAACGGCAATGAACAATTCCTTT
CAACAGAAGAGATTGCAATTGATTCCACCTGAAAAGGGCTCGTTCCCACTCGATCACGAA
AACGCATGTAGAAAATATATGCTTCTTTATATGAACTGCTTACGAATTAATAAAGACAAT
AATAGTGCCTGTCGTGAGCAATCAAAAGATTATTTAGCTTGTCGTATGGAAAATGGATTA
ATGGCTCATGAAAGTTGGGAGAAATTAGGCTTTAAAGATACGAACGAATAGAAAAGTCAA
AATACATAGAAATAAAAAAGCGAATTAGAAAAAAACAAAATGGCATCATCAAGACCTAAG
AATATTTTAATTGGTGCCACCGGCTCTGTAGCTACAATCAAATTACCAAATATTATTCAT
GAACTTAAATTAAAAGATCCTTCAGTAAATATAAGAGTAGTTGTAACAAGTAAAGCATTA
CAATTTATTTCAAGAGATTGTATACCAGCAGAAGTTTATCAAGATGAAAATGAATGGCAG
TTGTGGAAACAAAGAGGCGATCCAGTTCTTCATATTGATTTGGCAAAATGGGCAGATATT
TTTGTTATAGCACCGCTTGATGCAAATACGCTAGGTAAAATTAGCTCAGGCATGTGTGAT
AACTTATTAACGTGTGTAGCTCGTGCATGGGATCTGCAAAAACCACTTCTTTTTTGTCCA
GCAATGAATACAAAAATGTATTTGCATCCTATTACACGTAAACAAATTGCTGATTTAAGG
GAATTTGGATATATTGAAATTCGAGCAATTTCAAAGACATTAATGTGTGACACAGGCATT
GGAGGCATGGCAGAATATAAAACGATTGCAGATATGACTTATGCACATCTTAATAATATT
AAAGTCGAGCATCAATAA
>g12155.t13 Gene=g12155 Length=192
MASSRPKNILIGATGSVATIKLPNIIHELKLKDPSVNIRVVVTSKALQFISRDCIPAEVY
QDENEWQLWKQRGDPVLHIDLAKWADIFVIAPLDANTLGKISSGMCDNLLTCVARAWDLQ
KPLLFCPAMNTKMYLHPITRKQIADLREFGYIEIRAISKTLMCDTGIGGMAEYKTIADMT
YAHLNNIKVEHQ
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g12155.t13 | Gene3D | G3DSA:3.40.50.1950 | - | 1 | 191 | 0 |
| 2 | g12155.t13 | PANTHER | PTHR14359 | HOMO-OLIGOMERIC FLAVIN CONTAINING CYS DECARBOXYLASE FAMILY | 4 | 190 | 0 |
| 1 | g12155.t13 | Pfam | PF02441 | Flavoprotein | 7 | 181 | 0 |
| 3 | g12155.t13 | SUPERFAMILY | SSF52507 | Homo-oligomeric flavin-containing Cys decarboxylases, HFCD | 4 | 185 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0003824 | catalytic activity | MF |
KEGG
Orthology
- This transcript has been annotated with K01598 (phosphopantothenoylcysteine decarboxylase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
