Gene loci information

Transcript annotation

  • This transcript has been annotated as Probable E3 ubiquitin-protein ligase HERC2.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g12212 g12212.t1 isoform g12212.t1 21765215 21777541
chr_1 g12212 g12212.t1 exon g12212.t1.exon1 21765215 21765462
chr_1 g12212 g12212.t1 cds g12212.t1.CDS1 21765215 21765462
chr_1 g12212 g12212.t1 exon g12212.t1.exon2 21765523 21767667
chr_1 g12212 g12212.t1 cds g12212.t1.CDS2 21765523 21767667
chr_1 g12212 g12212.t1 exon g12212.t1.exon3 21767723 21769440
chr_1 g12212 g12212.t1 cds g12212.t1.CDS3 21767723 21769440
chr_1 g12212 g12212.t1 exon g12212.t1.exon4 21769494 21771227
chr_1 g12212 g12212.t1 cds g12212.t1.CDS4 21769494 21771227
chr_1 g12212 g12212.t1 exon g12212.t1.exon5 21771293 21771572
chr_1 g12212 g12212.t1 cds g12212.t1.CDS5 21771293 21771572
chr_1 g12212 g12212.t1 exon g12212.t1.exon6 21771635 21771658
chr_1 g12212 g12212.t1 cds g12212.t1.CDS6 21771635 21771658
chr_1 g12212 g12212.t1 exon g12212.t1.exon7 21771719 21771882
chr_1 g12212 g12212.t1 cds g12212.t1.CDS7 21771719 21771882
chr_1 g12212 g12212.t1 exon g12212.t1.exon8 21772009 21773806
chr_1 g12212 g12212.t1 cds g12212.t1.CDS8 21772009 21773806
chr_1 g12212 g12212.t1 exon g12212.t1.exon9 21773868 21774222
chr_1 g12212 g12212.t1 cds g12212.t1.CDS9 21773868 21774222
chr_1 g12212 g12212.t1 exon g12212.t1.exon10 21774280 21774735
chr_1 g12212 g12212.t1 cds g12212.t1.CDS10 21774280 21774735
chr_1 g12212 g12212.t1 exon g12212.t1.exon11 21774805 21775008
chr_1 g12212 g12212.t1 cds g12212.t1.CDS11 21774805 21775008
chr_1 g12212 g12212.t1 exon g12212.t1.exon12 21775077 21775227
chr_1 g12212 g12212.t1 cds g12212.t1.CDS12 21775077 21775227
chr_1 g12212 g12212.t1 exon g12212.t1.exon13 21775289 21775407
chr_1 g12212 g12212.t1 cds g12212.t1.CDS13 21775289 21775407
chr_1 g12212 g12212.t1 exon g12212.t1.exon14 21775466 21775511
chr_1 g12212 g12212.t1 cds g12212.t1.CDS14 21775466 21775511
chr_1 g12212 g12212.t1 exon g12212.t1.exon15 21775577 21776828
chr_1 g12212 g12212.t1 cds g12212.t1.CDS15 21775577 21776828
chr_1 g12212 g12212.t1 exon g12212.t1.exon16 21776893 21776967
chr_1 g12212 g12212.t1 cds g12212.t1.CDS16 21776893 21776967
chr_1 g12212 g12212.t1 exon g12212.t1.exon17 21777022 21777160
chr_1 g12212 g12212.t1 cds g12212.t1.CDS17 21777022 21777160
chr_1 g12212 g12212.t1 exon g12212.t1.exon18 21777272 21777403
chr_1 g12212 g12212.t1 cds g12212.t1.CDS18 21777272 21777403
chr_1 g12212 g12212.t1 exon g12212.t1.exon19 21777533 21777541
chr_1 g12212 g12212.t1 cds g12212.t1.CDS19 21777533 21777541
chr_1 g12212 g12212.t1 TTS g12212.t1 21778155 21778155
chr_1 g12212 g12212.t1 TSS g12212.t1 NA NA

Sequences

>g12212.t1 Gene=g12212 Length=11049
ATGGAAAATCTTTTACCACTTTTAACAGCACTCGACCACATTAATCGACTGTTATATGAC
ACTGATGTAAAAAATTCCGATCATATGGGATGGCCTGGTATTATTTCAACGAGTCGCGAT
AATGATTCGGATAGAATGACTGCTAATGAAGCGCAATTAATAAGAAAGAATGATTTTGAA
AATAGTTTATTGGATGGATGTAAATTTATCATTATTAATGGATGTGTTTATGACGTTAAG
GATTTTATTTGTGAAAATTCCGAAACTCAATCATTGATTGAATCAAATATTGGAAAAGAC
TTGACTAACGAATTAAGTGCATTGGAGCATCAAAAGACTTTGGAAGATATTACTGGCAAT
AACAGTATTTTTATTGGAAAATATGAGACAGAAACTGCATCAAAATGCAAAAAATTTGAC
CAGAGTTATGAAAAACTCTGTTATTTTGAATCAGAAAAAACATTAGCGTGGATTTTGGGA
ATGAGATCAAATATTTTACAGAAAGCAACTTGCTTGCAACCGGCTGAAATTACTTGTAAA
AAAATGTTGAATTCAATTATTCTTCGAGGTGGATTGCAAACAAATATTGCAAATCCTTTT
GATGAAGAGAAATTTGAAGCACGCAGCAGTGGATCAACTGCTGGAAGCACACCTACAACC
GATGTTTTTAACATTCTTGGTGATCTTCAGCCAATTACACAATTCAGTCCATTACAATTG
AGAATTCAATCATTAATTTATGGACTTGCTGAAGGAAAGACAAATGATCCAAATGTGAGT
GCATGGATTTCACTTTTTGAAAGATATTGCAAAGAAAATAATTTGATATGGCATCAAGAA
TATTCAACTGATCATCCAATTATTGATGTTGAAAGACTTTTAACTGCTGTACTTATTCGA
CATCAAAGTTTAGGCACTCTTGTTTTGGCTGTTATTGATCGAGATCTTACAGGTTCAGTT
GGAAAAATTCCACAACCGATAACAGACATTATTAAAATAGTTCACATGATGAAATGGAAT
TTAATAAAAATTCGTCAACAATTGAATAGAAGTTACAAAGAAGTATGTACACCAATATTA
GAAAAGTGTCGATTTTTACTCTATGAAGTTCGACCTGCAATAAGTCCTGAGCAATCGGGA
TTGAAAAAACTTTTTCATCATTATAAAGAGCCGAGATTTAAGACAATTGTAAAGCAAATC
ATTGAAGAAAATCAAATGAATCGTGAAGATCAAGAAATTGAGTCTGCTAAAATTGATGAT
TTATTAAATGCTTCAATTCAAAGCAATCACAATTCTTTATCGAAAGTTGCTCAATTTGTG
AGTGAACATTTCGAACGACATTTATCAAATGAAAGTCTTCATAAAATCGGTAGCTCTGAA
GCAATGAATTTTGAAATGATTCCATCAAAAACACCTTCGAATGAAAATTTGCTTGCGGTC
GATACACCAGTTGAAGAATGTTCACCACTCATGTCAAATGCTGAGGAATCTGTTCTAGCT
GAAAGTGAGGTGAAACCACTCAATACTGATGAATTTGTAAATAATGTTATTCTCAAATTG
AGTGAACGTTATAATCAAAATGAAGATGCTAAATTTAAGACAAGTGTTAATAATCAAATT
ATTGATTTTGTCATGCAAGAAAATCTTGATGTTGAAACTTTAAGACGTGCAATGTTTTGT
CAAATTCAACGTTATCAAACGAGAAAAGAAGGATTGAAAATGTTTAATGAATTATTATCA
ATAAATAATCTTCTTGATGCTGCGAAATATAATATTTATAATGGTTTCTTAAATTCTGCA
TATGGTGAAGAAAATGCAGAAAATTACGACCATCAATATGATCATATTCTTGAGAATTTG
AATCTCATTACAGCTTATCAAAAAGCAGACATTCTTATCGCTCATTCACATATACTTGAA
TGGACTATAAAAGAATTTCAAAAGTATGTAAATCAAGAGCCAATTGTCAATAAACAAAAA
TGGACTCATGGTGATAAGGATCAAACAAATCTTGGCACTTATGTATTTTTGAAAAAAGTT
TCACGTGCACGATTCTTGCTTATGATCTTTGGATTGTTATCTAAAAATTATACAGCAAAT
GAATTGAGTTTGTTAATCAATTCTGGCTTACTAGGGACAAGTCTCGGTCTTTTGCATCAA
ACAGGCAGCAATGATTTGCCACAAAGCAATAAAAATGACAAAGAGTTGAGTGTAGTTTAT
GAAGAAAATATCAAATTAAAGCACAATTTCTCTAAAGATGGTATGCTCACTGGTCCTGAA
TTAGTCAAGCAGATGAAAATTGGAACAAGAGTTGCACGCGGTGCTGATTGGAAATGGGGT
GAACAAGATGGCAATGGAGAAGGAAGAATTATAAGTGAAGTTGGTGATGATGGCTGGGTA
AGAGTTGAATGGGATACAGGAGCAACAAATTCATATCGAATGGGAAAAGAAGGGCAATAT
GATCTCAGACTTGCTGATAGTAGTTTCAAAACAATTTCACCAGATAAGGAGAGTGACAAA
GACAATGAACTTTATGAATCAAAACTACAACAAAATGATTTTCATCCAACAAAATTACTT
AAAAATGCTTGTATAAAACTTCTTCAAATGATTTCAACATCTGTTGGTGTGCATGGTGAT
AAAATGCAAAATGATGCAGTGAGAGTTTTTGTGACAATGTTTTATGCAATTTTATCACAA
AAGGGAAATTATTCATTAAATATTGGTCTAGATATGTGGCGATCTATAGCATTTTTAAGA
AGTATTTTGAGATCACAAAGCATTTCTAAGCATATAACATCAGATTTGTGGATAAAACTT
TATTTTGACATGTTAAAATCACCAATACAAAATGAGAAAGACGTTTATAAAAAGGTTCAA
TGCATTAAACTTCTTCAATCGACTTTAACTCAATGGAATGATTCTGACATTGACAGAACT
GAAAATATTGTAAATCAATTGTTCCTTCATCTTGGAAATATTTGCATGAATTGTCCTCAT
GATCAATCACTAACACAACTTCCAATTGGAATCAAAACAAAAGTTCTCGCTAGTGCTTCG
CATTCTGGCACGATAGCTGAAGAACTCATAACATTATTAAGGAAACTGCACACTTTACCT
TTGTGGAATGAAACAATAAATAATTTTATTTCACAAAAGATGTGTGTAGCTGCCGATATG
TTTATTGATATGGAGCGTGAAAATGGCATTTATGAAGAGAAACTTAATGTTTCTGCAGCA
TTAAATGTAATTGGAGGTTTTGATCCACGTTTGAGAATTGGAATTGATTTAATTTATGAC
AGTGTCAAATGTTCAATTTATCGAGTGACACAAAGTGGCACAATTATTCTCAATGTTCAC
AATTCAAATGAGACGAAAAATATATCGTTTGCAAAAGTTGAGAAAGTAATTGAACAAGGA
ATTTTTAGTCTCTCAAAATTATCACTGAATGAAATGCTTTTAAATTCTTGGGCAGTTTTG
ATGTATGGAATGAATATGGGAAAAAGCATTGAATCAGTTTCATCTTTTGACATTTCTTTC
CTGAGTAATCAACAAATTCAACTTGCAGCTGTTAAAGCAACTCAAGTTTTATTTAGACAT
CAAAGCTTATTAAAAACAATACTGAAGCAAAGATCACCAGGAATTTTAAAATATTCATCT
GATGATAGCATGTCTGATGATTCAAAGAATCAAAAATCAGATGAGAGTGATCACAAGAAA
GACACTCCATCAGTTCCAATGCCTAAACATGAGCTACTCGTACAAAGTATGCTCTCAAGA
GCCATTCAATCAAGTCCACTTAAAGCATGCTATACACAAACTGAAATGGAAATTGCTGCT
TTGGCAATTTGTCAGACACTTTCAGCACATTTTAAAAACAACCACATTCCAGCATCACAT
GTGAAATTCCAAAATGTTAAACAAGCAACAATGATCCATGGCGTTCCTTTATATAATGAG
TCAGTCAGTGAAAGCATTTACAATACTGCAAGTAATTATGCAACATTTGGAAGTGAATCA
TCAAGAGCTAATCCAGCAACAAAATTGGTCATTCAAATTATGGAAATGGGATTCACGAGA
AAAACTGTAGAATTAGCTTTAAAACAGATAACAAATCGTGTTGAAATTCTTCCAACTGCA
GAACAAGTTGTTCAATGGATTATCGATCATCCAGAATCAATCGTCGATGAAGATTCAAAA
TGTGTTTTAAATAAAATTAACAGTTTTAATGTAGCCAGCGCAATTGACAGTGATAATGAT
AGCACATGCTCTGAAAATCTGAACTCATCATCGCTCAGTCAACATGATAAGCCAGCAAAA
TATGCAAAACGAGATGATTTTAAAAATAGTGATCAATATGCAATTTATGTCAGAAGTCAT
ATTGTTCCAGGCATGATTGTTCGCTGTTGTCGTGATTTTGAAGAAATTCGAGCTGGTGAT
ATTGGAATTGTTTTAAAAATTGAACCCGATGAATTGCATGATCTTAATGTGAGAGTTGAC
TTTAAAAATCATGAGAGACCATTCTGGATGTGTTTTGGTCATTTGCAGTTACTTGAACCG
CCATCTGAAGATATTAAATCTTTAAACATCACTTATGGTTCTCATGTAAAAATCAAACCA
ACAAGTGGAGTTCCTCGAACTCAAGCAGTCAAAAATATTGTTGGCGTTGTAACTGCAATC
AATGGATTAGAAGTCATTGTTGATTTTCCACAACAAAAATCTTGGTGTGGTCAACTTTAT
GATCTTGAACTTGTTCATCCTGCATCAACTGAACATGAACTTTATGACATTATTGATGAT
TGGTCACAATGTGTAAAATCACTTACAGTTTCATCAAATGAAGGTTTAGCTAAAAATCTT
CTTGAACGCACAACATCGTTTTGGCAGAGTGCAAACTCACAAGGTCGTCCATGGATAAGA
CTTGAAATGCGTGAAAATATTCTCATTCATTCGCTTTCACTTCGAATTGAACCAAATGAT
TGTTCACATCAACCAAGCACAATCATTGTTAGAACTGGCGACAGTTTATCAAATTTGAAA
GACTTTAATTGGGTAACAATCAGATCTAATGATACTCATGTCATAATTCTTTCAAATGTT
CGTCAATATTTTAATTGGATTGAAATTTATATTAAACAATGCAGAAATAATGGCATTCAA
TGTCGTATTCACGATCTTTATATTGTTGGAAAAAGAAAACAAACTGATATTGATGCAATG
CTGACAAATGCAGCATTTTTAGCAAATGATAATGATATCAATGAGCCAACTTATGCATCG
AGTTCAAGTGGCTTTCTTGATGATAAAATTTCGAGCAAAACAAATTTGAATAGAGATGAA
GGAGCATCGAGAGTTTATGTATGGGGACTAAATGATAAAGAACAATTGGCTGGTTTGAAA
GGATCAAAAGTAAAAATTCCCATGTATTCAGCAATTTTGTCAAATCTTAAACCAATTCAT
ATTGCTGGTGGTTCAAAATCTCTCTTCATTGTTTCACAAGATGGAAAACTTTATGCATGC
GGTGAAGGCACAAATGGTCGACTTGGTCTTGGTCATAATAATAATGTTTCGACACCACAA
CAAGTTCCAGTTTTGAGTCAATATATTGTGAAGAAAATTGCAGTTCATTCTGGCGGCAAA
CATTGTCTAGCAATCACTTTAGATGGAAAGATTTTCTCATTTGGCGAGGGAGAAGACGGC
AAACTCGGCCACGGAAATCGATTAACACTTGAGAAGCCAAAACTAATTGAGACATTGAAA
ACTAAAAGAATTCGAGATGTCGCATGTGGAAGTGCACATAGTGCAGCAATTACAAGTCAA
GGAGAACTTTACACATGGGGCTGTGGAGAGTATGGTCGTTTAGGTCATGGTGATAATCAA
ACATTATTGAAACCAAAACTCGTTCAAAAACTTGTTGGTCAACGTGTTGTACAAGTTGCT
TGTGGTTCAAGAGATGCACAGACTTTGTGTTTGACAGAAGATGGAACCGTTTATTCATGG
GGAGATGGAGACTTTGGTAAATTAGGTAGAGGTGGATCAGATGGTTGCAGTGTGCCTCAA
CCAATAGAAAGATTAAATGGACTTGGAATTATACAAATTGAATGTGGTGCACAATTTTCA
CTTGCATTAACAAAAATAGGCGAAATATGGACTTTTGGCAAAGGAGATTACTATCGTTTG
GGACATGGATCTGATCAACATGTTAGAAAACCGACACCGATTCAAGGATTACGAGGAAAA
AAAGTTGTTCATGTAGCAGTTGGTGCATTGCATTGTTTGGCAGTTACTGATCAAGGACAA
ATCTATGCATGGGGTGATAATGATCATGGCCAACAGGGATCAGGTACCACAAGTGTAAAT
AAAAAACCTACGTTAGTCGTTGGTCTTGATGGAGTTTTTGTTAACCGAGTTGCATGTGGC
AGCTCTCATTCAGTTGCTTGGAGTTTACCTGACAATGAGCTTGAACATGAGAAAAAAGAG
GCAGTGCCATTTGCTTTTCCTAAAGATCCTCTTGGAGGTCATAGTTTAGGAATGTATTCA
ATTGATGATCAAACAACAGCTTCTCCATCAATTGTATGCAAAGCGAAACAACCAAGAAAA
TCATTATCTGAAATTATTTTATCACTTGAATCACCAGCTGCACTTCAAATTGCTCTTTCG
CATATTCTTAGTGCAATTAAAATTCTACAAGCGCGTTCATGCATAATTGCAGCTCTTACA
AGTCACGCTCAAATTAAAAATCATCAAACAACTTTCGATGCTGATAAAATATTGAAAGAA
GTGAAACCAGAAGACATAATTGAGCAAGATAAGCAAGATGTAATTGCCCAAACAAATCAG
CGTGATTTTGTCAACTCACAAATAGCAAGTGGCGGTGGTGAAAGTTTGGCTGATGATTGT
GAAATGCCAGCAGAAGCTGAAATATTAAATGATATCGAATATCCAAATAATCCACTACCA
AATACATCAAATAGTCTCTATAGAAGTCTCACTAATTCCATGTCAATGTCAATCTCGAGT
GTTAATAATGCAGCACAAAAAGCATCAAGAATGTCAACAAGTGCAATGTCAGTTATGGCT
TGCATTATTAATAGACAAGAAGAAATGATAAATGAAACAAATGTGACAAAATCAACCTTG
GATGAATTTTTAAGTCTTTTTGGTGAAACTGAATCAAGAAATTTACTTGAATTGCTTAAA
CTTAGTGTTTGTGGTCGAATTTCGGCGTCACAAACAAATGCAGAAACAATTGCAAATACT
TTAATTGAATTGGGATTAAATTCATCGACTATTGGAAATATGATTATAGAAACATGCATT
TCTGAACTTGAAGATCTCACATCACGTCATTGTTTAGAAAAAGTTCCAAAACCAGTCGTA
CAAGAAAGTTCGCATCCTTATGTTGATGATATCACTCTTGTTGGTCATGTAAAAATTCCT
GGTGCAGAATATTTAAGAATTGAATTTGATCCACAATGTTCAACTGAAAAGAGAAATGAT
CCTTTGATAATTATGGATTCATCAGGTCGAGTCATTGCAACACGCTCTGGTCGAGAGTTT
GCTCAATGGGCACAAGAAATTCGAATTCCTGGCGATGAAATGAGATGGAAATTTACAAGT
GATAATTCAGTGAATGGCTGGGGGTTCCGTTTTCTTGTTCATGGCATTATGCCTGCTTCA
TATCTTCAAGAGCTTGGTTCAGATAGAAAAATTCTTTCACAACCTTCAATCGATCTTGTC
ATGGTGTTACTTGACTCTAAACTTTCACCACAAAATCCAAATGTCCTGCTACGATTAATT
TCTGCTTTGTCACAATGTGCTCAAAAAGGAACATTGTCAATTAATCAACGCATTTGGTGT
CTTAAAAAGATTCATTATTATTTGACAACATCAAAATATTCTTCACATGCTACTGATAAT
TCTCTATTGGAAATTATTCATCCTTTAGTTCCAATGATATTAAAACAATATGAATATGAA
GAAGGACAAGTCAGAACTGGTGTTCATTTAATGCATTCTGAGTATTTTCAATGCATGATT
GCCCTTGCATGTGATTTAAATGTCGACAATATTTTACCACCTATTGAAGCTCATAAATGG
TCATGGTTCAAACGTTATTGTGCAGCAGTTCGTGTAGCAAAAGCTTTAATTCGACGCACT
CAATTACCAAAATCTTTTTGTATTGATGTGAGAAAGAAATTAGAAGCAACGGTTGGCAAT
AATAGTGGACCTATTAATGTCGTTCAAGCTGACTTGAGTTCATCAATGACATCATCTTCG
TCATATTATCAAAGTTCTTCAATGCAAGCTTCAGTACAATTTGAAAGTGAAATTTGTGAA
ACATTTGAAAAATCACCTTATGAAGATCATACTCTTTTCACTCAAAATCATGACTCGCAA
TTGCTTCAATGGTTCAATAGAAGACCAGAAGATTGGGCATTTTCTTTGGGTGGTGGTGCA
TCAACTATTTATGGTTTCGGTCATAATCATAGAGGCCAACTTGGTGGACTCGATGGAAGT
CGCATAAAAATTCCTACACCTTGTGAAGCACTCAGCATGTTAAGACCAGTTCAAATTGTT
GGCGGTGAGCAAACGCTTTATGCAGTGACACATGATGGAAAGGTTTATGCGACTGGATAT
GGTGCTGGCGGACGTTTAGGAATTGGAGGAACAGATTCAGTTGCAGTTCCAACTTTAATT
GAAAGTCTTCAACATGTTTTTATTAAAAAAGTTGCAGTAAATTCAGGTGGAAAACATTGC
TTGGCATTGTCTTCTGATCATGAAGTGTTTTCATGGGGTGAAGGGGAAGATGGAAAACTT
GGACACGGAAATAGAGATAGCTATGATCGTCCTAAATTAATTGAAGCATTATCTGGTCTT
AGTGTGATTGATATTGCATGTGGAAGTGCTCATAGTGCAGCTATAACATCAGAAGGCCAT
TTACTTACTTGGGGTAAAGGCCGTTACGGTCGTTTAGGTCATGGTGATTCTGAAGATCAA
TTGAAGCCGAAAGTTGTTGAAGGTCTTCTTGGTTATCGTGTAATTGACGTAGCATGTGGT
TCTGGCGATGCTCAAACATTATGCATCACTGATGATGACAATGTTTGGAGTTTTGGCGAT
GGTGATTATGGCAAGCTAGGTCGAGGTGGATCAGATGGCTGCAAAGTTCCCATGAAAATC
GAATCACTTGCTGGTTTAGGTGTAATCAAAGTTGAATGTGGTTCGCAATTTTCTGTGGCT
TTAACAAGAAGTGGCTCTGTTTATTCGTGGGGCAAAGGTGATTATCATAGATTAGGACAT
GGAAATAGTGAACACATTAGAAGACCAAAAAAAGTTGCTGCATTACAAGGCAAGAAAGTT
ATCTCAATTGCTACTGGATCTTTACATTGTATTGCTTGCACAGATTCAGGTGAAACATAC
GTATGGGGTGATAATGATGAAGGGCAACTAGGTGATGGAACAGTAACAGCAATACAACGT
CCGCGATTAGTGAATGCACTTCAAGGAAAACACATTGTACAAGTTGTATGCGGATCAGCA
CATACTCTTGCTATTTCAACTTGTCCTCATTCGACAAATTCAAGAACTTTACCCGCACCA
CCAATGGAATATGATTTAGTTCGTGACATTGATCCTGAAGTGCTTCAAAATCGTCTTGTT
CTTCTTCATCATTTCTCTGAATTAATTTGTCCATGTTTGGCAATGATTCCAAATGAAGGT
GATTTATCACTTGGTGCATTGAGAGATATTTTAGTATACAGCATAAAAGAAGCAAGTTTG
AGAAAAGTCATTCAATGCACAATGGTTCGTGATAAACCGCATGGACCGACAATCGAGCTT
AATCGTATACAAGTAAAAAGATCGCGATCAAGAACTGGAAATGGATTAGCTGGAATTGAT
GGAATGAAATCCGTTTTTGGTCAAATGGTTCAAAAACTTCCATTATTAACACAAGAATCA
CTCTTTTTACCCCATCGAGTATGGAAAGTTAAATTTGTTGGTGAGAGTGTTGATGATTGT
GGTGGAGGTTTTAGTGAAAGCATAGCGGAAATGTGTGATGAGCTTCAAAATGGTAGTGTT
CCATTATTAATTCAAACACCAAATGGACGAGGTGAAGCTGGTGCTAATCGTGACTGCTTC
TTACTCGATCCTACTTTGACTTCAGTTTTGCATATGAACATGTTTAGATTTTTGGGAGTT
TTAATTGGTATCGCTATAAGAACTGGTTCACCATTAAGTTTATGCTTAGCTGAACCTGTT
TGGAGACAATTAGCAGGCGAAACATTAAGGCCTTCAGATTTAACTGAAGTTGATCGAGAT
TATGTCACTGGCTTATTATGCATTCGTGATATGGATGATGATCCAAAAATATTCCAATCA
ATGGAACTTCCTTTTTCAACACCATCAGCCAAAGGTCATGAAGTTTTTCTATCTACAAAG
TACACTCATATCACATCAGAAAATCGTCATGAATATGTAAAACTTGCACTCAATTATCGA
TTGCATGAATTTGATGAACAAATCAAAGCTGTTCGCGATGGCATGAGCAAGGTGATTCCC
GTTCCGTTATTATCACTATTTTCTGCAACTGAACTTCAAGAGATGGTTTGTGGATCACCT
GACATTCCACTTGGATTATTGAAAACAGTTGCAACTTATAAAGGCGTTGACTCGACATCA
CCACTTGTTCAATGGTTCTGGGAAGTAATGGAAGAATTTACAAATCAAGAGCGATCACTT
TTTTTAAGATTTGTATGGGGAAGAACAAGACTTCCAAGAAGCATCGCTGACTTTAGAGGT
CGTGACTTTGTGTTACAAGTTTTAGATAAATATAATCCAGCAGATCATTTTTTGCCTGAA
AGTTATACTTGCTTCTTTTTGTTGAAAATGCCGAGATATTCATGCAAGGCAGTACTAATG
GAAAAACTGAAATACGCCATTCATTTTTGCAAGTCCATTGACACAGATGACTATGCACGA
GTTGCAATGGGTGATCCGATGAGTCATACTGCTAGCGAAGATAATTCTGATATCGAATCG
ATCGCCTAA

>g12212.t1 Gene=g12212 Length=3682
MENLLPLLTALDHINRLLYDTDVKNSDHMGWPGIISTSRDNDSDRMTANEAQLIRKNDFE
NSLLDGCKFIIINGCVYDVKDFICENSETQSLIESNIGKDLTNELSALEHQKTLEDITGN
NSIFIGKYETETASKCKKFDQSYEKLCYFESEKTLAWILGMRSNILQKATCLQPAEITCK
KMLNSIILRGGLQTNIANPFDEEKFEARSSGSTAGSTPTTDVFNILGDLQPITQFSPLQL
RIQSLIYGLAEGKTNDPNVSAWISLFERYCKENNLIWHQEYSTDHPIIDVERLLTAVLIR
HQSLGTLVLAVIDRDLTGSVGKIPQPITDIIKIVHMMKWNLIKIRQQLNRSYKEVCTPIL
EKCRFLLYEVRPAISPEQSGLKKLFHHYKEPRFKTIVKQIIEENQMNREDQEIESAKIDD
LLNASIQSNHNSLSKVAQFVSEHFERHLSNESLHKIGSSEAMNFEMIPSKTPSNENLLAV
DTPVEECSPLMSNAEESVLAESEVKPLNTDEFVNNVILKLSERYNQNEDAKFKTSVNNQI
IDFVMQENLDVETLRRAMFCQIQRYQTRKEGLKMFNELLSINNLLDAAKYNIYNGFLNSA
YGEENAENYDHQYDHILENLNLITAYQKADILIAHSHILEWTIKEFQKYVNQEPIVNKQK
WTHGDKDQTNLGTYVFLKKVSRARFLLMIFGLLSKNYTANELSLLINSGLLGTSLGLLHQ
TGSNDLPQSNKNDKELSVVYEENIKLKHNFSKDGMLTGPELVKQMKIGTRVARGADWKWG
EQDGNGEGRIISEVGDDGWVRVEWDTGATNSYRMGKEGQYDLRLADSSFKTISPDKESDK
DNELYESKLQQNDFHPTKLLKNACIKLLQMISTSVGVHGDKMQNDAVRVFVTMFYAILSQ
KGNYSLNIGLDMWRSIAFLRSILRSQSISKHITSDLWIKLYFDMLKSPIQNEKDVYKKVQ
CIKLLQSTLTQWNDSDIDRTENIVNQLFLHLGNICMNCPHDQSLTQLPIGIKTKVLASAS
HSGTIAEELITLLRKLHTLPLWNETINNFISQKMCVAADMFIDMERENGIYEEKLNVSAA
LNVIGGFDPRLRIGIDLIYDSVKCSIYRVTQSGTIILNVHNSNETKNISFAKVEKVIEQG
IFSLSKLSLNEMLLNSWAVLMYGMNMGKSIESVSSFDISFLSNQQIQLAAVKATQVLFRH
QSLLKTILKQRSPGILKYSSDDSMSDDSKNQKSDESDHKKDTPSVPMPKHELLVQSMLSR
AIQSSPLKACYTQTEMEIAALAICQTLSAHFKNNHIPASHVKFQNVKQATMIHGVPLYNE
SVSESIYNTASNYATFGSESSRANPATKLVIQIMEMGFTRKTVELALKQITNRVEILPTA
EQVVQWIIDHPESIVDEDSKCVLNKINSFNVASAIDSDNDSTCSENLNSSSLSQHDKPAK
YAKRDDFKNSDQYAIYVRSHIVPGMIVRCCRDFEEIRAGDIGIVLKIEPDELHDLNVRVD
FKNHERPFWMCFGHLQLLEPPSEDIKSLNITYGSHVKIKPTSGVPRTQAVKNIVGVVTAI
NGLEVIVDFPQQKSWCGQLYDLELVHPASTEHELYDIIDDWSQCVKSLTVSSNEGLAKNL
LERTTSFWQSANSQGRPWIRLEMRENILIHSLSLRIEPNDCSHQPSTIIVRTGDSLSNLK
DFNWVTIRSNDTHVIILSNVRQYFNWIEIYIKQCRNNGIQCRIHDLYIVGKRKQTDIDAM
LTNAAFLANDNDINEPTYASSSSGFLDDKISSKTNLNRDEGASRVYVWGLNDKEQLAGLK
GSKVKIPMYSAILSNLKPIHIAGGSKSLFIVSQDGKLYACGEGTNGRLGLGHNNNVSTPQ
QVPVLSQYIVKKIAVHSGGKHCLAITLDGKIFSFGEGEDGKLGHGNRLTLEKPKLIETLK
TKRIRDVACGSAHSAAITSQGELYTWGCGEYGRLGHGDNQTLLKPKLVQKLVGQRVVQVA
CGSRDAQTLCLTEDGTVYSWGDGDFGKLGRGGSDGCSVPQPIERLNGLGIIQIECGAQFS
LALTKIGEIWTFGKGDYYRLGHGSDQHVRKPTPIQGLRGKKVVHVAVGALHCLAVTDQGQ
IYAWGDNDHGQQGSGTTSVNKKPTLVVGLDGVFVNRVACGSSHSVAWSLPDNELEHEKKE
AVPFAFPKDPLGGHSLGMYSIDDQTTASPSIVCKAKQPRKSLSEIILSLESPAALQIALS
HILSAIKILQARSCIIAALTSHAQIKNHQTTFDADKILKEVKPEDIIEQDKQDVIAQTNQ
RDFVNSQIASGGGESLADDCEMPAEAEILNDIEYPNNPLPNTSNSLYRSLTNSMSMSISS
VNNAAQKASRMSTSAMSVMACIINRQEEMINETNVTKSTLDEFLSLFGETESRNLLELLK
LSVCGRISASQTNAETIANTLIELGLNSSTIGNMIIETCISELEDLTSRHCLEKVPKPVV
QESSHPYVDDITLVGHVKIPGAEYLRIEFDPQCSTEKRNDPLIIMDSSGRVIATRSGREF
AQWAQEIRIPGDEMRWKFTSDNSVNGWGFRFLVHGIMPASYLQELGSDRKILSQPSIDLV
MVLLDSKLSPQNPNVLLRLISALSQCAQKGTLSINQRIWCLKKIHYYLTTSKYSSHATDN
SLLEIIHPLVPMILKQYEYEEGQVRTGVHLMHSEYFQCMIALACDLNVDNILPPIEAHKW
SWFKRYCAAVRVAKALIRRTQLPKSFCIDVRKKLEATVGNNSGPINVVQADLSSSMTSSS
SYYQSSSMQASVQFESEICETFEKSPYEDHTLFTQNHDSQLLQWFNRRPEDWAFSLGGGA
STIYGFGHNHRGQLGGLDGSRIKIPTPCEALSMLRPVQIVGGEQTLYAVTHDGKVYATGY
GAGGRLGIGGTDSVAVPTLIESLQHVFIKKVAVNSGGKHCLALSSDHEVFSWGEGEDGKL
GHGNRDSYDRPKLIEALSGLSVIDIACGSAHSAAITSEGHLLTWGKGRYGRLGHGDSEDQ
LKPKVVEGLLGYRVIDVACGSGDAQTLCITDDDNVWSFGDGDYGKLGRGGSDGCKVPMKI
ESLAGLGVIKVECGSQFSVALTRSGSVYSWGKGDYHRLGHGNSEHIRRPKKVAALQGKKV
ISIATGSLHCIACTDSGETYVWGDNDEGQLGDGTVTAIQRPRLVNALQGKHIVQVVCGSA
HTLAISTCPHSTNSRTLPAPPMEYDLVRDIDPEVLQNRLVLLHHFSELICPCLAMIPNEG
DLSLGALRDILVYSIKEASLRKVIQCTMVRDKPHGPTIELNRIQVKRSRSRTGNGLAGID
GMKSVFGQMVQKLPLLTQESLFLPHRVWKVKFVGESVDDCGGGFSESIAEMCDELQNGSV
PLLIQTPNGRGEAGANRDCFLLDPTLTSVLHMNMFRFLGVLIGIAIRTGSPLSLCLAEPV
WRQLAGETLRPSDLTEVDRDYVTGLLCIRDMDDDPKIFQSMELPFSTPSAKGHEVFLSTK
YTHITSENRHEYVKLALNYRLHEFDEQIKAVRDGMSKVIPVPLLSLFSATELQEMVCGSP
DIPLGLLKTVATYKGVDSTSPLVQWFWEVMEEFTNQERSLFLRFVWGRTRLPRSIADFRG
RDFVLQVLDKYNPADHFLPESYTCFFLLKMPRYSCKAVLMEKLKYAIHFCKSIDTDDYAR
VAMGDPMSHTASEDNSDIESIA

Protein features from InterProScan

Transcript Database ID Name Start End E.value
46 g12212.t1 CDD cd14402 UBA_HERC2 1349 1392 6.44802E-17
45 g12212.t1 CDD cd00078 HECTc 3281 3654 3.44476E-118
36 g12212.t1 Gene3D G3DSA:3.10.120.10 Flavocytochrome B2 49 140 1.4E-9
42 g12212.t1 Gene3D G3DSA:2.30.30.920 - 755 831 6.5E-24
40 g12212.t1 Gene3D G3DSA:1.10.8.10 DNA helicase RuvA subunit 1343 1399 3.2E-7
41 g12212.t1 Gene3D G3DSA:2.30.30.30 - 1440 1520 1.4E-24
43 g12212.t1 Gene3D G3DSA:2.60.120.260 - 1585 1741 3.1E-12
39 g12212.t1 Gene3D G3DSA:2.130.10.30 - 1784 2151 4.1E-144
38 g12212.t1 Gene3D G3DSA:2.130.10.30 - 2822 3189 7.9E-156
35 g12212.t1 Gene3D G3DSA:3.90.1750.10 Hect 3305 3538 5.2E-41
44 g12212.t1 Gene3D G3DSA:3.30.2160.10 Hect 3427 3503 5.2E-41
37 g12212.t1 Gene3D G3DSA:3.30.2410.10 Hect 3540 3653 1.0E-27
55 g12212.t1 MobiDBLite mobidb-lite consensus disorder prediction 1219 1247 -
54 g12212.t1 MobiDBLite mobidb-lite consensus disorder prediction 1222 1246 -
18 g12212.t1 PANTHER PTHR22870:SF398 E3 UBIQUITIN-PROTEIN LIGASE HERC2 1034 2129 0.0
21 g12212.t1 PANTHER PTHR22870 REGULATOR OF CHROMOSOME CONDENSATION 1034 2129 0.0
17 g12212.t1 PANTHER PTHR22870:SF398 E3 UBIQUITIN-PROTEIN LIGASE HERC2 2821 2889 0.0
20 g12212.t1 PANTHER PTHR22870 REGULATOR OF CHROMOSOME CONDENSATION 2821 2889 0.0
19 g12212.t1 PANTHER PTHR22870:SF398 E3 UBIQUITIN-PROTEIN LIGASE HERC2 2890 3677 0.0
22 g12212.t1 PANTHER PTHR22870 REGULATOR OF CHROMOSOME CONDENSATION 2890 3677 0.0
25 g12212.t1 PRINTS PR00633 Chromosome condensation regulator RCC1 signature 1785 1801 3.4E-10
27 g12212.t1 PRINTS PR00633 Chromosome condensation regulator RCC1 signature 1875 1891 3.4E-10
23 g12212.t1 PRINTS PR00633 Chromosome condensation regulator RCC1 signature 1891 1905 3.4E-10
26 g12212.t1 PRINTS PR00633 Chromosome condensation regulator RCC1 signature 1984 2002 3.4E-10
24 g12212.t1 PRINTS PR00633 Chromosome condensation regulator RCC1 signature 2042 2063 3.4E-10
3 g12212.t1 Pfam PF00173 Cytochrome b5-like Heme/Steroid binding domain 68 117 3.0E-5
1 g12212.t1 Pfam PF06701 Mib_herc2 768 826 8.5E-17
2 g12212.t1 Pfam PF11515 Mouse development and cellular proliferation protein Cullin-7 1444 1520 3.7E-28
12 g12212.t1 Pfam PF00415 Regulator of chromosome condensation (RCC1) repeat 1834 1885 7.9E-11
13 g12212.t1 Pfam PF00415 Regulator of chromosome condensation (RCC1) repeat 1888 1937 5.5E-12
9 g12212.t1 Pfam PF00415 Regulator of chromosome condensation (RCC1) repeat 1941 1983 1.9E-13
7 g12212.t1 Pfam PF00415 Regulator of chromosome condensation (RCC1) repeat 1994 2043 2.9E-13
14 g12212.t1 Pfam PF00415 Regulator of chromosome condensation (RCC1) repeat 2047 2095 2.8E-12
8 g12212.t1 Pfam PF00415 Regulator of chromosome condensation (RCC1) repeat 2099 2146 1.9E-10
10 g12212.t1 Pfam PF00415 Regulator of chromosome condensation (RCC1) repeat 2872 2923 5.7E-7
11 g12212.t1 Pfam PF00415 Regulator of chromosome condensation (RCC1) repeat 2926 2975 4.1E-13
16 g12212.t1 Pfam PF00415 Regulator of chromosome condensation (RCC1) repeat 2978 3021 8.1E-12
5 g12212.t1 Pfam PF00415 Regulator of chromosome condensation (RCC1) repeat 3032 3081 6.1E-12
15 g12212.t1 Pfam PF00415 Regulator of chromosome condensation (RCC1) repeat 3084 3132 6.1E-12
6 g12212.t1 Pfam PF00415 Regulator of chromosome condensation (RCC1) repeat 3137 3185 8.7E-12
4 g12212.t1 Pfam PF00632 HECT-domain (ubiquitin-transferase) 3352 3651 4.7E-57
56 g12212.t1 ProSiteProfiles PS51416 MIB/HERC2 domain profile. 757 828 27.818
71 g12212.t1 ProSiteProfiles PS51284 DOC domain profile. 1578 1755 11.986
62 g12212.t1 ProSiteProfiles PS50012 Regulator of chromosome condensation (RCC1) repeat profile. 1783 1834 9.539
63 g12212.t1 ProSiteProfiles PS50012 Regulator of chromosome condensation (RCC1) repeat profile. 1835 1888 13.981
61 g12212.t1 ProSiteProfiles PS50012 Regulator of chromosome condensation (RCC1) repeat profile. 1889 1940 15.911
67 g12212.t1 ProSiteProfiles PS50012 Regulator of chromosome condensation (RCC1) repeat profile. 1941 1992 14.001
60 g12212.t1 ProSiteProfiles PS50012 Regulator of chromosome condensation (RCC1) repeat profile. 1995 2046 14.685
57 g12212.t1 ProSiteProfiles PS50012 Regulator of chromosome condensation (RCC1) repeat profile. 2047 2098 14.504
65 g12212.t1 ProSiteProfiles PS50012 Regulator of chromosome condensation (RCC1) repeat profile. 2099 2150 14.906
68 g12212.t1 ProSiteProfiles PS50012 Regulator of chromosome condensation (RCC1) repeat profile. 2821 2872 10.162
59 g12212.t1 ProSiteProfiles PS50012 Regulator of chromosome condensation (RCC1) repeat profile. 2873 2926 13.68
69 g12212.t1 ProSiteProfiles PS50012 Regulator of chromosome condensation (RCC1) repeat profile. 2927 2978 16.212
66 g12212.t1 ProSiteProfiles PS50012 Regulator of chromosome condensation (RCC1) repeat profile. 2979 3030 13.077
70 g12212.t1 ProSiteProfiles PS50012 Regulator of chromosome condensation (RCC1) repeat profile. 3033 3084 12.997
64 g12212.t1 ProSiteProfiles PS50012 Regulator of chromosome condensation (RCC1) repeat profile. 3085 3136 15.65
58 g12212.t1 ProSiteProfiles PS50012 Regulator of chromosome condensation (RCC1) repeat profile. 3137 3188 15.408
72 g12212.t1 ProSiteProfiles PS50237 HECT domain profile. 3329 3661 46.678
47 g12212.t1 SMART SM01337 APC10_2 1598 1753 1.7E-14
53 g12212.t1 SMART SM00706 tecpr 1801 1842 150.0
52 g12212.t1 SMART SM00706 tecpr 1966 2002 350.0
50 g12212.t1 SMART SM00706 tecpr 2063 2106 130.0
49 g12212.t1 SMART SM00706 tecpr 2839 2879 2.0
51 g12212.t1 SMART SM00706 tecpr 3051 3092 45.0
48 g12212.t1 SMART SM00119 hect_3 3315 3661 3.0E-57
31 g12212.t1 SUPERFAMILY SSF55856 Cytochrome b5-like heme/steroid binding domain 49 129 5.76E-6
30 g12212.t1 SUPERFAMILY SSF159034 Mib/herc2 domain-like 761 827 1.14E-17
29 g12212.t1 SUPERFAMILY SSF63748 Tudor/PWWP/MBT 1444 1521 4.81E-22
28 g12212.t1 SUPERFAMILY SSF49785 Galactose-binding domain-like 1597 1731 2.34E-18
34 g12212.t1 SUPERFAMILY SSF50985 RCC1/BLIP-II 1783 2150 1.4E-100
33 g12212.t1 SUPERFAMILY SSF50985 RCC1/BLIP-II 2820 3187 6.63E-98
32 g12212.t1 SUPERFAMILY SSF56204 Hect, E3 ligase catalytic domain 3317 3650 2.49E-87

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0046872 metal ion binding MF
GO:0016567 protein ubiquitination BP
GO:0004842 ubiquitin-protein transferase activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values