General information for g12259.t17
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g12259 is located on chr_1: 22052638..22053915 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g12259 | g12259.t17 | isoform | g12259.t17 | 22052029 | 22053915 |
| chr_1 | g12259 | g12259.t17 | exon | g12259.t17.exon1 | 22052029 | 22053682 |
| chr_1 | g12259 | g12259.t17 | cds | g12259.t17.CDS1 | 22052483 | 22052638 |
| chr_1 | g12259 | g12259.t17 | exon | g12259.t17.exon2 | 22053839 | 22053915 |
| chr_1 | g12259 | g12259.t17 | TTS | g12259.t17 | 22054193 | 22054193 |
| chr_1 | g12259 | g12259.t17 | TSS | g12259.t17 | NA | NA |
Sequences
>g12259.t17 Gene=g12259 Length=1731
GAAATTTAAAGTAACAGATCCTCGAAATGAACCACGAAGAGGCGAACGTGTTCCTTTTGT
CATTGTTAATGGACCACCTAACACAACTTTAATTCGTTTAGTAAAAACTCCGTTGGAAGT
ACTCAATGATGAAAATTTAAAAATCAATAGTCTTTACTATATAACGAAATCAATTATTCC
ACCACTCAATCGATGTCTTTTATTAATTGGTGCAAATGCTCATGATTGGTTCTCTGAACT
TCCAAAAAAATATCAAGCATTATCGATTGTAAATAATCAAACGAATGATTATCAAACAAC
ACGAAAAGGAACAATTTCACAATTTTTCAACACAACTAATTGTGCGGTTTGTGAGACTCC
ATGTGAAAATAATTTATGCAATGTGTGTCAAAAAAATTCTCAAGCAGCTGCTCTTGTATT
GACGGATAAAATTTTTAGAATAGAAAGGAAATATATGGGTGTAAAGGAAATGTGTAAAGC
GTGTTGTTGCAGGAATATAAATTTCAAATGCATCTCACTTGACTGTCCTACATTATTTTC
TCTAACTCAAATCAATCGTGATTATGAGCAAGTAGTTCACCTTCGAAGAATATTAAGTGA
AATGTTTTAAATTTATGATTTAAAAAATTTAAATTGAATAAAATCTTGAATATATTTCAC
CTATAAAACATTTCTGTGAGGTATAAAATTTCTATTAGGCTTATTGATTTTGTTTTTTCG
TTTGTCTCAAATATTTGTATGTTTGCTTTCTTTGTAACCAATAAGAAAGAGCTGCTGCAG
CCGTTGTAAAACCAGTTAAATACCAAAGATTATGTAAAATAATATGATCACCATATTCAA
AAATTGGAGCGCCAAGTGAGGCAGCAATTGTAAATAATTGTACTGCTGTGTTTACTTTGC
TGATAAATGTCGGAGCTAATTGGGCAGTAACATGTGTTGCATCAAAATATTTCTTTAGAG
TTCGATGATTAGGTGGAAGACTGTTATATCTGATAACGAATGCAGCTATAATGAGGAATA
AATCACGAAAAACAATCATAACAGTCAACCAAAGAGGCATCAGGTTTGTGTAAGTTAATG
CAACTACAAGTGTAGTTACTAATGTTTTGTCAGCCAAAGGGTCAAGAAAACTTCCAAAAT
TTGATTTTTGACCAGCATAATTTCTCGCAATATATCCATCGGCCAAATCAGTCAAGCCAG
CAATAATCAGCAAGCCCATTCCGAAAGAATAATTTCCATGAATGATAACATAACCGAGAT
AAGGAGACATTGCGATTCGTGCAATACAAAGGAAATTTGGAATGGTGAAAATATTCTCTC
GCTCAATTACTTCTTCAACTTTCGTTCGCTTATCTCTGATGTTATCCTGTATTTGCTGCT
TTTTAGCTTTTAACTGATGTTTCTTCTTTTCGAGCGCTTGTTGCAAAATTTCAGTGCCTT
TCACTGTTTTGACTGTTAAACCATTTTTCTTGACATCTTGTGTACTGCTATAATAAACAA
GAAATTGCTGTGTACATCCTAAAACTTTTCTCTGATCGATAAGAAACTGACGAGGAGTAA
ATAAACATTTTGCTCGGAATAGATTGGCACAGGATTTTGAACGTAAAGAGCATTGTAATA
ATTTTATTGGTAGCATATTTGTTTTTCTTGCACAATTATTTTATAGCACTTTTCATCTTA
TTGCAATATTATTGTTTTCAATCAAAATTGTGTTTTCTATTTTTCTCTAGC
>g12259.t17 Gene=g12259 Length=51
MGVKEMCKACCCRNINFKCISLDCPTLFSLTQINRDYEQVVHLRRILSEMF
Protein features from InterProScan
No InterPro annotations for this transcript.
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
