General information for g12275.t5
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Dolichyl-diphosphooligosaccharide–protein glycosyltransferase subunit 1.
Parent gene
- The parent gene g12275 is located on chr_1: 22114543..22115579 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g12275 | g12275.t5 | TTS | g12275.t5 | 22113841 | 22113841 |
| chr_1 | g12275 | g12275.t5 | isoform | g12275.t5 | 22114543 | 22115579 |
| chr_1 | g12275 | g12275.t5 | exon | g12275.t5.exon1 | 22114543 | 22115579 |
| chr_1 | g12275 | g12275.t5 | cds | g12275.t5.CDS1 | 22114544 | 22114888 |
| chr_1 | g12275 | g12275.t5 | TSS | g12275.t5 | 22115633 | 22115633 |
Sequences
>g12275.t5 Gene=g12275 Length=1037
ATGAATTTTAAATCAAGTATTACAATATTTCTAGTGTTTCTAATTAGTTTAACTTCTTGT
AATTCAATTGATCAAGAAGTAGAAAATAAAAACGTAGACAGAACGATTGATATAACATCA
CAATTGGTAAAAATTACATACAAGATTACACTTGAGCACAAGTCTAAGAAACCGATTACA
AATTATGTATTTGTACTTCCCATCAATGAATGCAACAAAGTATCAATTGTTACTGCTCGT
GATGCTGCTAAGAAGGAACTCAAATTGACAACATCAAAGAATTCGGAAGAATGCGCATAC
ACGATGACGTTGTCTGCTGGAAGTAATCCAGTAATTTATGTTGAAGCTGTATTTTCAAAA
GCTCTTGAGCCATATCCAGTTGCTATTCCACAATCAGAACGTCAATTGGTTCGCTACTTT
GGAAGTGCATATTTCTATTCGCCATATAAAACTTTGTCTCAAAAGACCACAATTCATCTT
GCATCAAAAAGCGTTGAGAGTTATACTCAACTTAAACCATCATCGCAAAATGATGCTCAA
ATTTTCTATGGCCCTTATGAAAACATTGCACGTAAGTGAAATTATTCATTGTAAGACCTC
ATCATATTGATAATCTTTCATAATTTTTTCTTATATTGTAGCAAATACAAAGCATGAAAT
AGTTGTTCATTACGAAAATAACACACCATTTATGACAATTACAAGATTAGAGCGCACAAT
TGAAATCTCACTTTGGGGCAATGTTGCTGTTGAAGAAACAATTGATATCATTCATTCTGG
CGCTTTGCTTAAAGGTTCATTCTCTCGATATGATTATCAAAAAGATTCTCGAAGTGGACC
AGCAAGTGTAAAATCATACAAAACAATTCTACCAGCATCAGCAACTGGTGTATATTATCG
CGATATTAATGGAAATATTTCAACATCGGCGATGAGAATTTTAAAGGATTCAGTTGAACT
TGATTTGAGACCACGTTTCCCTCTCTTTGGTGGTTGGCGTACACATTATACTGTTGGTTA
CAATGTTCCAAGCTTTG
>g12275.t5 Gene=g12275 Length=115
MTITRLERTIEISLWGNVAVEETIDIIHSGALLKGSFSRYDYQKDSRSGPASVKSYKTIL
PASATGVYYRDINGNISTSAMRILKDSVELDLRPRFPLFGGWRTHYTVGYNVPSF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g12275.t5 | PANTHER | PTHR21049:SF0 | DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE–PROTEIN GLYCOSYLTRANSFERASE SUBUNIT 1 | 1 | 114 | 0 |
| 3 | g12275.t5 | PANTHER | PTHR21049 | RIBOPHORIN I | 1 | 114 | 0 |
| 1 | g12275.t5 | Pfam | PF04597 | Ribophorin I | 2 | 114 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006486 | protein glycosylation | BP |
| GO:0016021 | integral component of membrane | CC |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
