General information for g12441.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as GATOR complex protein NPRL2.
Parent gene
- The parent gene g12441 is located on chr_1: 23668116..23669974 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g12441 | g12441.t1 | TTS | g12441.t1 | 23667337 | 23667337 |
| chr_1 | g12441 | g12441.t1 | isoform | g12441.t1 | 23668116 | 23669974 |
| chr_1 | g12441 | g12441.t1 | exon | g12441.t1.exon1 | 23668116 | 23668406 |
| chr_1 | g12441 | g12441.t1 | cds | g12441.t1.CDS1 | 23668116 | 23668406 |
| chr_1 | g12441 | g12441.t1 | exon | g12441.t1.exon2 | 23668470 | 23669279 |
| chr_1 | g12441 | g12441.t1 | cds | g12441.t1.CDS2 | 23668470 | 23669279 |
| chr_1 | g12441 | g12441.t1 | exon | g12441.t1.exon3 | 23669876 | 23669974 |
| chr_1 | g12441 | g12441.t1 | cds | g12441.t1.CDS3 | 23669876 | 23669974 |
| chr_1 | g12441 | g12441.t1 | TSS | g12441.t1 | 23670080 | 23670080 |
Sequences
>g12441.t1 Gene=g12441 Length=1200
ATGCTAACACAAGAGAACAATTGTAGCAATAGTTATAAGCTGGAAAATATAGGAGCAAAT
ATAGGAAAAGAAGGAATAATTCGATGCATATTTTTGAGCGAGTTTCATGCAACAGCTGGA
AGTAAAATTACATGTCAAACACCAATTAATTTCATTTCTAAACATGCATTTGATTTAATA
AATGCTTATATTCTGCCTAAGCGAGAACTTGAGAGACAAGTGCTAACAGTAAATACGCTT
AATATAAAAATTGTTGGCTATCCAGTGAAAATACAGTGTGAAAAATATGCACGAAATGCA
TTCTATTTTAATTTGTGCTTCGTTTGTGATCATTACTGTAGAAGTGTACAATATGAGCCG
ATTGTAAAGAAATTATCAGAATTTCTTATTATGATGGAAATGGAAGTCAACTTTTTAAGC
AATGAAGATTATCGACCAAGAATTCAACAAATGCTTAATAAAATAATTACTGATCTCAAT
GAAACGCGTGTGTGTACGATTACAGAAGAAGAAACGACAGTTTTCTTAAAAATTGTAAAA
ATAGCTGAGGATCCACCCGAGGTGACTGACTACGAAGTGCCAATGTTGAAACAAGAATTT
GAAAATATGTCACTTGATCAATGGGATCTCACTACACAACAAGTTTTGCCATTTATTAAT
AGTGTCTATCATGTTGCAAAAATTTCAGCACTGTCTGATGTTGAAAATGCTTTAGTAAAA
GCTTGCATTCAAAATCTCTGCTATTATGATGTTGTTGAGCTTGTCCCATTATTCAAATAT
TCAAATGTTTACATGTGTACAAGAAATTTACAAAAATTGGCGCGAAATCAAAATTTTGCC
CAGGAATGTCTCAAATATGTCGCAATGAATGAAGATGAGTCGCTTCCTACACTTTATAGT
GTTTTTCAACTGTATTCACAAATGACACATGGAGTTAATTTGAAAACACTTTGCATACGG
CTATCGCCAAGAAACAATAACATAAATGAACGAAAACTTGTTAGTTTTGGACTCAAGCAT
AATCTCATACGATTAATTAATAAATATCCAATTTTTACTGGCTCAATTCCAAATGTACGA
CAAAAGCTTTATAATGGTCTTAATCATTTTGACGAAATTTGCTGTTCCACTGGACTCTCG
ACGCAAAAGCTCGAAGAACTGATTGACTCGGACACAAACGTGACTGTTCTTATGAAGTAA
>g12441.t1 Gene=g12441 Length=399
MLTQENNCSNSYKLENIGANIGKEGIIRCIFLSEFHATAGSKITCQTPINFISKHAFDLI
NAYILPKRELERQVLTVNTLNIKIVGYPVKIQCEKYARNAFYFNLCFVCDHYCRSVQYEP
IVKKLSEFLIMMEMEVNFLSNEDYRPRIQQMLNKIITDLNETRVCTITEEETTVFLKIVK
IAEDPPEVTDYEVPMLKQEFENMSLDQWDLTTQQVLPFINSVYHVAKISALSDVENALVK
ACIQNLCYYDVVELVPLFKYSNVYMCTRNLQKLARNQNFAQECLKYVAMNEDESLPTLYS
VFQLYSQMTHGVNLKTLCIRLSPRNNNINERKLVSFGLKHNLIRLINKYPIFTGSIPNVR
QKLYNGLNHFDEICCSTGLSTQKLEELIDSDTNVTVLMK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g12441.t1 | PANTHER | PTHR12991 | NITROGEN PERMEASE REGULATOR 2/TUMOR SUPPRESSOR CANDIDATE 4 | 27 | 351 | 0 |
| 3 | g12441.t1 | PANTHER | PTHR12991 | NITROGEN PERMEASE REGULATOR 2/TUMOR SUPPRESSOR CANDIDATE 4 | 362 | 398 | 0 |
| 1 | g12441.t1 | Pfam | PF06218 | Nitrogen permease regulator 2 | 27 | 293 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K20405 (nitrogen permease regulator 2)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
