General information for g12454.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g12454 is located on chr_1: 23831236..23832717 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g12454 | g12454.t1 | isoform | g12454.t1 | 23831236 | 23832717 |
| chr_1 | g12454 | g12454.t1 | exon | g12454.t1.exon1 | 23831236 | 23831992 |
| chr_1 | g12454 | g12454.t1 | cds | g12454.t1.CDS1 | 23831236 | 23831992 |
| chr_1 | g12454 | g12454.t1 | exon | g12454.t1.exon2 | 23832503 | 23832717 |
| chr_1 | g12454 | g12454.t1 | cds | g12454.t1.CDS2 | 23832503 | 23832717 |
| chr_1 | g12454 | g12454.t1 | TSS | g12454.t1 | NA | NA |
| chr_1 | g12454 | g12454.t1 | TTS | g12454.t1 | NA | NA |
Sequences
>g12454.t1 Gene=g12454 Length=972
ATGTTGTCGGTGCTCTTGGGAACCACAACGATAACAATGAATCGTGGGGAGCAGGAAACT
CTCTATAGACAAGCACGAAATTTACGCCTGCACCAGGAATCTAAAGCACAACGAAATAGC
AGCAAGCCGCGTCATCACTCGTACGGCAATATACATCAAATTCACTCGACAACTTCTAAG
CAAGGAATGAACTTGCGATCACAATTTGGGCATGATGATCAACAGCGACCGCATGATGAC
TTAGTTTTGAGTGTTCTTAAAAGTCCATTGCGTGATCAGTCATTATTGAGTAATTTGAGT
GTAGCGGGTGCGAGTGTCAATAGCGATAGTGTCGAAGGCGGCAGCGTTAATCGCATGTCA
ACGATTACGACACTGACAACGACAACAATTGATAATGTAGCAGCGACAAGTCCACATAGT
GGTGGAGCATATACGGCATTACAGGCATCAGAAGATGATTTAGCTGATGATATTGAACTG
ACTATGGAAACAACTGAATTAAACGAGACTAAAGGAAAAAATTCAATTAACAATAATAAT
TCGGACCTTTCTCCATATGGCCTTAAATTTTTAAGACGCTTTCGTGCACCGAAATTTGAG
GCACACCATCATCGACGTGTACCCACACCAATGAGACGTAAACATAATCGCGGTCGATCG
AAATCTTCCGCAGACATTCTCGATGGCGTTAATGCCAATAATCCTGATGAGGAAGTTGCA
ATGCAAGAAGTTGGAACTGGTGAAGGCATGGAAGGAGAGCGATGCACACTGATAGACGAC
AACAAATATTCTACTTTTAACCTATTTACAGTAGATAATCCGTATTACCCTATAGCTCTT
CCCATCGATCAAGCATTTAAGGCAAAGTATGTGTTCCATCATAGACGAGGGAAGACATTT
CAAGAGCGACTTTACGTATTTCTCGAACATCCTGGCGGCTGGTTGTGCTTTATTTATCAT
TTTACAGTGTAA
>g12454.t1 Gene=g12454 Length=323
MLSVLLGTTTITMNRGEQETLYRQARNLRLHQESKAQRNSSKPRHHSYGNIHQIHSTTSK
QGMNLRSQFGHDDQQRPHDDLVLSVLKSPLRDQSLLSNLSVAGASVNSDSVEGGSVNRMS
TITTLTTTTIDNVAATSPHSGGAYTALQASEDDLADDIELTMETTELNETKGKNSINNNN
SDLSPYGLKFLRRFRAPKFEAHHHRRVPTPMRRKHNRGRSKSSADILDGVNANNPDEEVA
MQEVGTGEGMEGERCTLIDDNKYSTFNLFTVDNPYYPIALPIDQAFKAKYVFHHRRGKTF
QERLYVFLEHPGGWLCFIYHFTV
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g12454.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 206 | 228 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
