Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Mitochondrial pyruvate carrier 2.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g12462 g12462.t1 TSS g12462.t1 23898051 23898051
chr_1 g12462 g12462.t1 isoform g12462.t1 23898202 23898884
chr_1 g12462 g12462.t1 exon g12462.t1.exon1 23898202 23898261
chr_1 g12462 g12462.t1 cds g12462.t1.CDS1 23898202 23898261
chr_1 g12462 g12462.t1 exon g12462.t1.exon2 23898320 23898377
chr_1 g12462 g12462.t1 cds g12462.t1.CDS2 23898320 23898377
chr_1 g12462 g12462.t1 exon g12462.t1.exon3 23898448 23898458
chr_1 g12462 g12462.t1 cds g12462.t1.CDS3 23898448 23898458
chr_1 g12462 g12462.t1 exon g12462.t1.exon4 23898639 23898884
chr_1 g12462 g12462.t1 cds g12462.t1.CDS4 23898639 23898884
chr_1 g12462 g12462.t1 TTS g12462.t1 23899498 23899498

Sequences

>g12462.t1 Gene=g12462 Length=375
ATGGCATCTAGACTTTATAGAGCAATGATCAATTTCGCTGACCCAAAAGTTCCTCAGAAA
CTTCGTCCGCTTTGGGAACATCCTGCAGGTCCTAAAACGATCTTTTTCTGGTCTCCAGTT
TTCAAATGGGGTCTCGTGTTGGCAGGTTTAAAAGATTTATCGCGACCAGCTGATCAGTTG
AGTGTATCGCAATCTGCATCATTAGCAGCCACTGGCATTATTTGGAGTCGTTATTCACTT
GTGATTATTCCTAAGAACTATGGATTATTTTCAGTGAATTTATTTGTTGGCCTCACACAA
ATTATTCAATTGTATCGCGCTTGGTCATTTCAAAGAAATCAGAATAAATTGCAAGCAGTA
GAAGCAGCTAAGTGA

>g12462.t1 Gene=g12462 Length=124
MASRLYRAMINFADPKVPQKLRPLWEHPAGPKTIFFWSPVFKWGLVLAGLKDLSRPADQL
SVSQSASLAATGIIWSRYSLVIIPKNYGLFSVNLFVGLTQIIQLYRAWSFQRNQNKLQAV
EAAK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
2 g12462.t1 PANTHER PTHR14154:SF2 MITOCHONDRIAL PYRUVATE CARRIER 2 19 112 7.7E-42
3 g12462.t1 PANTHER PTHR14154 UPF0041 BRAIN PROTEIN 44-RELATED 19 112 7.7E-42
1 g12462.t1 Pfam PF03650 Mitochondrial pyruvate carriers 21 119 8.7E-40
6 g12462.t1 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 33 -
9 g12462.t1 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 34 53 -
5 g12462.t1 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 54 64 -
8 g12462.t1 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 65 83 -
7 g12462.t1 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 84 88 -
10 g12462.t1 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 89 108 -
4 g12462.t1 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 109 124 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006850 mitochondrial pyruvate transmembrane transport BP
GO:0005743 mitochondrial inner membrane CC

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values