General information for g12496.t30
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Lipid storage droplets surface-binding protein 2.
Parent gene
- The parent gene g12496 is located on chr_1: 24006078..24014951 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g12496 | g12496.t30 | TTS | g12496.t30 | 24005029 | 24005029 |
| chr_1 | g12496 | g12496.t30 | isoform | g12496.t30 | 24005031 | 24007016 |
| chr_1 | g12496 | g12496.t30 | exon | g12496.t30.exon1 | 24005031 | 24005514 |
| chr_1 | g12496 | g12496.t30 | cds | g12496.t30.CDS1 | 24005243 | 24005514 |
| chr_1 | g12496 | g12496.t30 | exon | g12496.t30.exon2 | 24005584 | 24006665 |
| chr_1 | g12496 | g12496.t30 | cds | g12496.t30.CDS2 | 24005584 | 24006010 |
| chr_1 | g12496 | g12496.t30 | exon | g12496.t30.exon3 | 24006774 | 24007016 |
| chr_1 | g12496 | g12496.t30 | TSS | g12496.t30 | 24007159 | 24007159 |
Sequences
>g12496.t30 Gene=g12496 Length=1809
ATGTCTAATATTGAAAATCACAGTGATAAAGTTGAATATAATGATAATGGTGCAGTTCAA
AAAGTGACAGTGAATGTTTCTTCTTTATTGCCTCATTTGGAATCAATTGATCGCTTACTC
TCCATACCAGTTTGCTCAATTGCATTTAACCAGAGTCAATCAGTTTATGGAAAAGTAAAA
GGTGAGTTTATTACGCGTTAAAAGTCATTTTTTTAAAATGTCCTGGATTTTTCTTCCTTC
CATTTTCTTTATATATATTCTATATAACCGAAACTAAAAGTATATATCATAATTCTACAT
ATTTTAAAAATAAATTGATAAGAAAGAAATGATTCAAATTCTTTTAATGACATGACATTT
CTTTAAATGCATTTAATAAGAAAAGTTTTTATCTGGAACACTAAAAACAGATAAGGAAAG
GATCATATATGTGTTTTCAATTTCGTAGACATTTAATCATTCGTTTTCTGTTTCGAGAAT
AAAAGAAAAAGAATGAATACATATGAGTGATAGTACAAAGTTCAGCAAAAAAATAAAATT
GTACGGCTATATTAATGACTTAATAAAAGTAATTTATGCCGACTTTGCTTTAATAAGGGA
GTAAAAAACTTACTAACGCTGTTTTCATCGTCATGTACATTTAATTATAATTTTCTTTCC
ACTTCCAATCAAATCAGTAACGCGTGATACTTTTAATTTCAAAACAAAATACATTTTAAT
TCTTTTATATACTTACCTAAATTAAACCTCACACTGATCACATGGCTTATCTCAAACTCT
AACATGTCACCTCATATTCTTTCTTTCGGTATCACTAACAGTATTTCTACGTCACTTTTA
CTGTGACTCTGATAAGAAAGTAATTTAATAAATCTCAATTCTTTCAGATTTTAATCCTAT
GTTCAATTGGGCTTTTCGTACAGCTGAAGACGTTGTAAAAGGAGCAGTTACAATTTCAGC
TCCAATTGTCAATAAATTTGATAAACCAATCAATTTTGTTGATCAAACATTGGTAAAAGG
GATTGATAAACTCGAAGCATCTGCACCAATCATTAAGGAACAACCTGGAGAAATTTTGAG
TCAAGCTAAAACAAGAGTAATAGGAGTTGTGCAACCAAGAATTGATAGAGTTTGTGAATT
TAGAAGAGCGAGTACAGAGAAAGCGGCTTCATTGAAGGAATTATCGTACAATAAAGCAAA
CGAAGTACTCGCAACACATTATGGTGCATTAGCAGTTTCAGGTTTTGACTCAACAGCAGC
GCTCGCTGAACGTCTCTTGGACACATTCTTTCCAAAGAATGAAGAAGATGATAAAGATGA
TGACAAACCAATCTCTGCAACTGAAGACCCAGTCTTGCATTCAGTACAAACTATTGGTGC
ACTTTCGAATAAAGTAGCTCGTCGCGTCTATAGAACTGTTTCTCGACAAGTCAAGCAACT
GAAGAAAGAAGATCTTGCCGAATACCTTGCCTCACTTATTGCTGTCCTTCGACTTACTCA
ATACCTTAATATCATCAACAAATCCAATTTATTTCAACAACAACCACAACAGTCGAACTC
AAACGGAACAGCTATAGTGAAAGTTGATGCTAAATGAATAACATCGAATCTATTACTCAG
GAGACATTTTTTCTTTCTTCTCTATACATAATTTTTATTTAAGCTAAGCTAATCCAGTGG
AGAATAATTGAAATTTTTGTTTTTATATGTATGTCATCTATTGTTTTTTTGGGGAATATT
TTTGTTACATTTATTGGCAGCAATTGAAATGTTGCTAAAAATTGTTTAATAAATTCTTTT
TGATAAAAA
>g12496.t30 Gene=g12496 Length=232
MFNWAFRTAEDVVKGAVTISAPIVNKFDKPINFVDQTLVKGIDKLEASAPIIKEQPGEIL
SQAKTRVIGVVQPRIDRVCEFRRASTEKAASLKELSYNKANEVLATHYGALAVSGFDSTA
ALAERLLDTFFPKNEEDDKDDDKPISATEDPVLHSVQTIGALSNKVARRVYRTVSRQVKQ
LKKEDLAEYLASLIAVLRLTQYLNIINKSNLFQQQPQQSNSNGTAIVKVDAK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g12496.t30 | Coils | Coil | Coil | 164 | 184 | - |
| 2 | g12496.t30 | PANTHER | PTHR14024 | PERILIPIN | 1 | 212 | 7.4E-96 |
| 3 | g12496.t30 | PANTHER | PTHR14024:SF50 | LIPID STORAGE DROPLETS SURFACE-BINDING PROTEIN 2 | 1 | 212 | 7.4E-96 |
| 1 | g12496.t30 | Pfam | PF03036 | Perilipin family | 9 | 205 | 4.8E-19 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
