General information for g12499.t13
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g12499 is located on chr_1: 24016098..24016328 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g12499 | g12499.t13 | isoform | g12499.t13 | 24013794 | 24015729 |
| chr_1 | g12499 | g12499.t13 | exon | g12499.t13.exon1 | 24013794 | 24015729 |
| chr_1 | g12499 | g12499.t13 | cds | g12499.t13.CDS1 | 24013852 | 24014115 |
| chr_1 | g12499 | g12499.t13 | TTS | g12499.t13 | 24016365 | 24016365 |
| chr_1 | g12499 | g12499.t13 | TSS | g12499.t13 | NA | NA |
Sequences
>g12499.t13 Gene=g12499 Length=1936
TGAGACACCGAATGAGAAAGTCAGTGAAAAGAGCAGTGTTAGTCAATTAACAACGCAAAT
GATTCAAAATGAAGCGACTTTGTCAGACTCGCAACTGAAAACAGCTGTTGGAACATCTAT
TGTTGATTCCAGCAATAAACCAAGTGATGTTGATTTTGTTAGAGCAACTGCTGAAGTACG
AGATCTTCGTGAGGAGAACAGCAAAATGCATCAAGAAAATTTGGAACTAAAGGTTAATAA
ATACAATATTTTTAAAATTATTAATACTATGATAAATTTAATTTTAGGAGCAAATTATTC
GTTTGAAAGCTATGGTAGATAACCAAAAGGATACAACAAGTTCATCACCATCAGCTAAAA
TTATTTCAAATCCTTATTCACCACCACAACTTGGACAGCAGCAACAAATGCCCATTATAT
GGGTGATTGCAGCTGTTGCAATGGCCATTTTCGGTTTGATCCTTGGCAAATTTGTCCTTT
GAACGCATTAAGACTACAAAGCATGAAAAGCATACAGCAAACACAAGCAACAAGAAAAAT
GAATGATAAAAAAAATATAAAAAAGTAGCTCATCGTTTTTATTTCCAGCCAATGTGTCCA
ATTATGTGACAATTAATTATTCTTGTGGAGAGACATATGATGATGATGGTATAAAAATTA
AAGTGTTGGGATGGGCGTAAAGAATCATAATTTACATTAAAGATTTTTCCTAAAAACAAA
CATTATTACGACAGAAAGTTAAACTGTGGTCAAAACCAATAATGTAATGTCATATATTTC
TTTTCAATTAGAAAATTGTATTTAATGAAAAATTTTGAAACTATAAAATATAACTCATCA
ATTGGATTGAATGATTCTTCTTTCAGAAGTGATTCATTCTCTCTCTCTCTCCTTTCCTTT
CCATAATCTTTTTATTTTATTAAAAGAAAAATAAAAATAATGAGTAAAAAAGTCAAACTT
AATATAAAGAAAACATATATATAAAAAAATAGAGAGCAGGTTCATTTAATTAATTATTTA
ATCCATTAATGTTACACACAAATTCACTCATAAAAGAGAAGAAAAGAAATTATCGCATTC
ATTTATGGATGATAATTTGAAAAGTAAACGAATTACTTTTAATTGTTGCTTTATTGTTTC
TTCTAATTTTGCAAGTTGCTATAATTCTTTTCCTTTCTCTAATATCATCATCTTATGTGT
TTTTATACAAAAGAAAAATTTATATTTTTTTGTGTCAAATTTTTATGTTATAATTTTTTT
ATATAATTTCTAAATGAATGAAAGAAATCCGTACGTCAAAAAACAATTTAAATGATAAAA
AAAGTATAAAAACCAAGCATGTTAAAGTCAAAACTATTAAGAAATTCACCAAAGTGAGAC
TTATGTGTACACTATTAATGCAATAGCATTATTACACATTAAGTTCTCACTATGAGTGAA
TAATATAAGAAAAAAATTTACATTATTTGATGGGGGGGTGGATGTTGAACCATTTGCATT
TTGTTACTCTTTTCATTTTATATTAAAACATATTGCAAAAAGATATGAGAAAAAAATTCT
ACGGTAATTATGAATCAGACATCAAATTCTTTTGATTCTTTCCCTTCAATAGATAATACA
TTTTGAATATATTTCATATTATGCAGAATGAATGAAAGAGAGATACCTATAAAGAGAAAT
TTGCAAGAAAATTAATATGCTCTCTCGTGCACAACAAATTTAAACAAGATTCAAAAGTGT
GCATATTGATATAAAAAAATCTGCATATTATGAATTAAAAATTCAAAATTGAGTTTTGAT
TAATAAAATATAAAATAAAAGAAATGGGAAATGCTTAAAAATATAAAAATATAAGTTTTT
TTGTAACGTATTTTTCAGCGATTTGGATTTTAGTGTGCGTAGTTTCTTTCTTTTCAATTT
TTGATTTTTTCGAAGC
>g12499.t13 Gene=g12499 Length=87
MIQNEATLSDSQLKTAVGTSIVDSSNKPSDVDFVRATAEVRDLREENSKMHQENLELKVN
KYNIFKIINTMINLILGANYSFESYGR
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g12499.t13 | Coils | Coil | Coil | 33 | 60 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
