General information for g12609.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Aminoacylase-1.
Parent gene
- The parent gene g12609 is located on chr_1: 24780967..24781548 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g12609 | g12609.t2 | TTS | g12609.t2 | 24780154 | 24780154 |
| chr_1 | g12609 | g12609.t2 | isoform | g12609.t2 | 24780290 | 24781548 |
| chr_1 | g12609 | g12609.t2 | exon | g12609.t2.exon1 | 24780290 | 24780882 |
| chr_1 | g12609 | g12609.t2 | cds | g12609.t2.CDS1 | 24780290 | 24780790 |
| chr_1 | g12609 | g12609.t2 | exon | g12609.t2.exon2 | 24781028 | 24781458 |
| chr_1 | g12609 | g12609.t2 | exon | g12609.t2.exon3 | 24781527 | 24781548 |
| chr_1 | g12609 | g12609.t2 | TSS | g12609.t2 | 24781608 | 24781608 |
Sequences
>g12609.t2 Gene=g12609 Length=1046
ATGACTGAGAAATCAAAGACTGATGCTTGTGTTGAATTTCTGAAGAAACTTGCAGAAGAG
TTGAAAGTTGAATTTAAAGTTTCTTGCCCGGCAAAAGATGATAGGCCGACAGTCATTTTA
TCAGTCATTGGAACTCAGCCAGAATTGCCAGCAATAATGTTAAATTCTCATATGGATGTT
GTTCCTGTTTTTGAAGAGTTTTGGACACATAAACCATTTGATGCTGATATTGATGAAGAA
GGGAAAATTTTTGCTCGTGGTGCACAAGATATGAAGTGTGTTGGAATGCAATATTTAGCT
GCCATCAGAAGATTAAAAAGACATAATGTCACACTAAAAAGAACAATTCATGTGACATTT
GTACCTGATGAGGAAATTTTTGGACCAGATGGAATGAAGGCTTTTGTAAATCACAACGAT
TTTCGTCAGTTGAATGTCGGTTTCTTACTTGATGTCATGGATCTCTTTTACTTGAAGACA
CAGCTGCTGAAAGTATGCATTTTTTATTGAACAAAATTTATGATTTTCGTAGAAGTCAAG
AGAAAATGCTCGAAGATAATCCAATTCTTGAACTGGGTGATGTTACAACAATCAATGTCA
CACGAATCAATGGCGGAAAACAGAGAAATGTTTTGCCAGCTTTTATTGAATTAACTGTTG
ATATTCGTATGGCGTTGACTGTAAATTTGGATGATTTTGAAGCAATGATTAATCGATGGG
CTAAAGAATGTGGAAAGAAAATTGAAATTGAATTTGTTACCAAAGAACCATTTTGTCCAC
CTACAAAAATTGATGACAGCAATGCTTATTGGACTGCATTCAAGAGTGCAGTAGATGAAT
TAAATTTGGAGATTAAACCGTTAGTTTTTCCTGCTGGAACTGACGCTGCTTATGTCAGAG
CAGTTGGAATTCCTGCAATCGGTTTCAGTCCAATGAATAATACTCCTGTTTTACTTCATG
ACCACGATGAATTTCTTCATGCTGATGTGTATCTCAAAGGAATTGAAATTTATGAAAAAA
TTCTCGAAAAAGTTTGCAATTTTTAA
>g12609.t2 Gene=g12609 Length=166
MLEDNPILELGDVTTINVTRINGGKQRNVLPAFIELTVDIRMALTVNLDDFEAMINRWAK
ECGKKIEIEFVTKEPFCPPTKIDDSNAYWTAFKSAVDELNLEIKPLVFPAGTDAAYVRAV
GIPAIGFSPMNNTPVLLHDHDEFLHADVYLKGIEIYEKILEKVCNF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g12609.t2 | Gene3D | G3DSA:3.30.70.360 | - | 1 | 73 | 0 |
| 8 | g12609.t2 | Gene3D | G3DSA:3.30.70.1640 | - | 86 | 166 | 0 |
| 3 | g12609.t2 | PANTHER | PTHR45892 | AMINOACYLASE-1 | 9 | 165 | 0 |
| 4 | g12609.t2 | PANTHER | PTHR45892:SF1 | AMINOACYLASE-1 | 9 | 165 | 0 |
| 2 | g12609.t2 | Pfam | PF01546 | Peptidase family M20/M25/M40 | 5 | 161 | 0 |
| 1 | g12609.t2 | Pfam | PF07687 | Peptidase dimerisation domain | 14 | 62 | 0 |
| 6 | g12609.t2 | SUPERFAMILY | SSF55031 | Bacterial exopeptidase dimerisation domain | 9 | 69 | 0 |
| 5 | g12609.t2 | SUPERFAMILY | SSF53187 | Zn-dependent exopeptidases | 78 | 164 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016787 | hydrolase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed