General information for g12609.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Aminoacylase-1.
Parent gene
- The parent gene g12609 is located on chr_1: 24780967..24781548 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g12609 | g12609.t3 | TTS | g12609.t3 | 24780154 | 24780154 |
| chr_1 | g12609 | g12609.t3 | isoform | g12609.t3 | 24780967 | 24781548 |
| chr_1 | g12609 | g12609.t3 | exon | g12609.t3.exon1 | 24780967 | 24781458 |
| chr_1 | g12609 | g12609.t3 | cds | g12609.t3.CDS1 | 24780968 | 24781458 |
| chr_1 | g12609 | g12609.t3 | exon | g12609.t3.exon2 | 24781527 | 24781548 |
| chr_1 | g12609 | g12609.t3 | cds | g12609.t3.CDS2 | 24781527 | 24781548 |
| chr_1 | g12609 | g12609.t3 | TSS | g12609.t3 | 24781608 | 24781608 |
Sequences
>g12609.t3 Gene=g12609 Length=514
ATGACTGAGAAATCAAAGACTGATGCTTGTGTTGAATTTCTGAAGAAACTTGCAGAAGAG
TTGAAAGTTGAATTTAAAGTTTCTTGCCCGGCAAAAGATGATAGGCCGACAGTCATTTTA
TCAGTCATTGGAACTCAGCCAGAATTGCCAGCAATAATGTTAAATTCTCATATGGATGTT
GTTCCTGTTTTTGAAGAGTTTTGGACACATAAACCATTTGATGCTGATATTGATGAAGAA
GGGAAAATTTTTGCTCGTGGTGCACAAGATATGAAGTGTGTTGGAATGCAATATTTAGCT
GCCATCAGAAGATTAAAAAGACATAATGTCACACTAAAAAGAACAATTCATGTGACATTT
GTACCTGATGAGGAAATTTTTGGACCAGATGGAATGAAGGCTTTTGTAAATCACAACGAT
TTTCGTCAGTTGAATGTCGGTTTCTTACTTGATGAAGGAATTGCAAGTCCAACTAATGTT
TTTAGTGTTTTTTATGGCGAGAGAACTTGCTGGC
>g12609.t3 Gene=g12609 Length=171
MTEKSKTDACVEFLKKLAEELKVEFKVSCPAKDDRPTVILSVIGTQPELPAIMLNSHMDV
VPVFEEFWTHKPFDADIDEEGKIFARGAQDMKCVGMQYLAAIRRLKRHNVTLKRTIHVTF
VPDEEIFGPDGMKAFVNHNDFRQLNVGFLLDEGIASPTNVFSVFYGERTCW
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g12609.t3 | Gene3D | G3DSA:3.40.630.10 | Zn peptidases | 1 | 171 | 2.4E-51 |
| 2 | g12609.t3 | PANTHER | PTHR45892 | AMINOACYLASE-1 | 5 | 171 | 7.2E-71 |
| 3 | g12609.t3 | PANTHER | PTHR45892:SF1 | AMINOACYLASE-1 | 5 | 171 | 7.2E-71 |
| 1 | g12609.t3 | Pfam | PF01546 | Peptidase family M20/M25/M40 | 53 | 158 | 2.3E-26 |
| 5 | g12609.t3 | ProSitePatterns | PS00758 | ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. | 52 | 61 | - |
| 4 | g12609.t3 | SUPERFAMILY | SSF53187 | Zn-dependent exopeptidases | 7 | 169 | 5.19E-36 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016787 | hydrolase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
