General information for g1265.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Inorganic pyrophosphatase.
Parent gene
- The parent gene g1265 is located on chr_3: 9177219..9179980 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1265 | g1265.t1 | isoform | g1265.t1 | 9177219 | 9179980 |
| chr_3 | g1265 | g1265.t1 | exon | g1265.t1.exon1 | 9177219 | 9177369 |
| chr_3 | g1265 | g1265.t1 | cds | g1265.t1.CDS1 | 9177219 | 9177369 |
| chr_3 | g1265 | g1265.t1 | exon | g1265.t1.exon2 | 9177461 | 9177863 |
| chr_3 | g1265 | g1265.t1 | cds | g1265.t1.CDS2 | 9177461 | 9177863 |
| chr_3 | g1265 | g1265.t1 | exon | g1265.t1.exon3 | 9178605 | 9179807 |
| chr_3 | g1265 | g1265.t1 | cds | g1265.t1.CDS3 | 9178605 | 9179807 |
| chr_3 | g1265 | g1265.t1 | exon | g1265.t1.exon4 | 9179866 | 9179980 |
| chr_3 | g1265 | g1265.t1 | cds | g1265.t1.CDS4 | 9179866 | 9179980 |
| chr_3 | g1265 | g1265.t1 | TSS | g1265.t1 | NA | NA |
| chr_3 | g1265 | g1265.t1 | TTS | g1265.t1 | NA | NA |
Sequences
>g1265.t1 Gene=g1265 Length=1872
ATGGAAGTAGTTCAAGTTAGTTCTTCAGAATCTATCACATCTTTTACAAGCAGCGACATA
GATGCTTTTGAAAACTTTAAATCACAAGAAATTGCGGAAATTGATTTAACTAAAGATATA
ATTCCAAAGGGAATTTTGAAAATAAACAGCCATAATGTTCCTATAGGATTATATGAAACA
GCCGCCGGAAATTTCATCTTTTCTCGATCCATTTTTGTTTCTACAATTGCATACATACAT
GCGAAAAATTTCAAGCAGTTTATTCAGCATTTTCATCTATCTTGTGAGAATGTAGATCAC
TCAAAACCATTTATTGAATGTCTAAAGAAGTCTATAGATGAAGTTAAGGATAAAATATCA
ATTGAGAAAATTATAACCGATGATGGAGCTTGTATTGCTCGTGGCGATTTATTGGAGGAA
AAATATTTATCAATTTGGCAAACATGTTTAGGGCATGCCCCATTAAGAGTTTTTAAAAAA
GTTTATGAAGATAAGATTATACATTTCGGATCAGGGAAAAAAACTCTTAAAGCATGTATG
GATAGCTTTTCAAATGAGTTCAATTTTATTAAATATGAAACAATATTTACATCTGAATCT
CGTTCAATAAAGAATAAATTTAAGGCGATCAAAATCATGATGGATACAATTAATGATCAG
ATTGACATCCAGACAGAAGGAATTCAAGAACTTTTGGAAATATTACAAGTGTTATCTGGT
CTAGTAGCATTATATTTGATGATCACACAAGATGGCGGTGAAATGGATCAACAAAAGTTT
AATACTTTAAAAACTTTGACTGAAAATTTAGACAAATTTATAAATCCAGATGATTCAAAC
AGATATTCATTGTCAACTGATTTTGCAAATATACGAAAGGCGTTATTATATTATATATAT
TTGCATGAAAATGAAGAAGTCAATTTGTACCAAAACCTGACAGTATTCAGCAATCTCTGC
TGTTACTGTGTGATGTCAGAAGCAAGAAATTGCAAAGACATTCAAAGTTTTATGAAATTA
TTATTAGAAAGAGCAATTGAAGGTGGCATTGTTGTAGCACAATTGGACACCCGTTTTATC
AAGTCTAAAATTGACTTGATTAAGAGGCCTATCAACCTTGCATCATTGCCAATAGTCATG
CTATCCAACCATTACGAAATAGCAACATTCAACAACTTTTTGAAAATTTCAACTGACGAA
ATTAAACAACAACACGCTGATGCTTATAAAAAATTTGAGCAAATTTATAATGAATATAAC
ACAACAAATTTAAACAGGAAATCAAAAGAATTACTTACAGCCATTTTCAAGTTGTTTTAT
AAATCAACTGGTTGCAAAGGCGACAATGATCCAATTAATGTCTGTGAATTTGGTTCACGT
GTAGCTAAACGCAGTGATGTCATTCAAGTAAAAATTCTTGGCACTCTTGCACTTATCGAT
GAAGGTGAAACTGACTGGAAAGTTTTTGCTATCGATATTAATGATCCAGTTGCTGATCAA
ATGGAAGATATACAAGATATTGAGAAATTCTTTCCTGGTTTATTAAGAGCAACAGTCAAA
TGGTTCAAATTTTATAAAGTGCCAGATGGTAAACCTGAGAATCAATTTGCATTTAATGCT
GAAGCAAGGGACGCTGCATTTGCTAAAAATATCGTGACGGTAACTCATACCTTTTGGCAG
CGCTTGAATAAGAAAGAAGTTGAAAACCCTAAAATTTCATGTTCAACTGTAGAAAATACA
GATTCACCATTTGTTATCTCTAGTGATCAAGCAGAAGAAATATTTTCAAAAGCCACTGAA
GAAGGCGAGATCCAGAGCCATTTAATGAAGCAATCAACAAGTGTCATTTTCTTCATCTTC
AATAGAAAATAA
>g1265.t1 Gene=g1265 Length=623
MEVVQVSSSESITSFTSSDIDAFENFKSQEIAEIDLTKDIIPKGILKINSHNVPIGLYET
AAGNFIFSRSIFVSTIAYIHAKNFKQFIQHFHLSCENVDHSKPFIECLKKSIDEVKDKIS
IEKIITDDGACIARGDLLEEKYLSIWQTCLGHAPLRVFKKVYEDKIIHFGSGKKTLKACM
DSFSNEFNFIKYETIFTSESRSIKNKFKAIKIMMDTINDQIDIQTEGIQELLEILQVLSG
LVALYLMITQDGGEMDQQKFNTLKTLTENLDKFINPDDSNRYSLSTDFANIRKALLYYIY
LHENEEVNLYQNLTVFSNLCCYCVMSEARNCKDIQSFMKLLLERAIEGGIVVAQLDTRFI
KSKIDLIKRPINLASLPIVMLSNHYEIATFNNFLKISTDEIKQQHADAYKKFEQIYNEYN
TTNLNRKSKELLTAIFKLFYKSTGCKGDNDPINVCEFGSRVAKRSDVIQVKILGTLALID
EGETDWKVFAIDINDPVADQMEDIQDIEKFFPGLLRATVKWFKFYKVPDGKPENQFAFNA
EARDAAFAKNIVTVTHTFWQRLNKKEVENPKISCSTVENTDSPFVISSDQAEEIFSKATE
EGEIQSHLMKQSTSVIFFIFNRK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g1265.t1 | Gene3D | G3DSA:3.90.80.10 | Inorganic Pyrophosphatase | 382 | 622 | 0 |
| 2 | g1265.t1 | PANTHER | PTHR10286:SF49 | INORGANIC PYROPHOSPHATASE 2, MITOCHONDRIAL | 441 | 590 | 0 |
| 3 | g1265.t1 | PANTHER | PTHR10286 | INORGANIC PYROPHOSPHATASE | 441 | 590 | 0 |
| 1 | g1265.t1 | Pfam | PF00719 | Inorganic pyrophosphatase | 442 | 560 | 0 |
| 4 | g1265.t1 | SUPERFAMILY | SSF50324 | Inorganic pyrophosphatase | 440 | 607 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0000287 | magnesium ion binding | MF |
| GO:0004427 | inorganic diphosphatase activity | MF |
| GO:0006796 | phosphate-containing compound metabolic process | BP |
| GO:0005737 | cytoplasm | CC |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed