General information for g12692.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g12692 is located on chr_1: 25291881..25293275 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g12692 | g12692.t1 | TTS | g12692.t1 | 25291873 | 25291873 |
| chr_1 | g12692 | g12692.t1 | isoform | g12692.t1 | 25291881 | 25293275 |
| chr_1 | g12692 | g12692.t1 | exon | g12692.t1.exon1 | 25291881 | 25293275 |
| chr_1 | g12692 | g12692.t1 | cds | g12692.t1.CDS1 | 25291881 | 25293275 |
| chr_1 | g12692 | g12692.t1 | TSS | g12692.t1 | 25293293 | 25293293 |
Sequences
>g12692.t1 Gene=g12692 Length=1395
ATGAGTTCTAGTCAAAATTCGAATCAATTTAAATTATATTTGCTAGAGTCTTCGTTATTT
TTATTCAATTTTGCAACAGTTTTATCATCATCATTGTTACTTAATCAATTATTAAAGCAA
TTTTGTATTCAATTTGGATATGAAAAATCATTGTGTGATGTGATAAGTGAAAATAACAAC
AGTACTGCTGATATCGAGGAAGAACTTCAATCTCATGTCACTAACATTATCTTACTGAAA
AATATCCTTAATTCAAGTGTTCCAGCTATTTTACAACTTTTTCTCGGACCATGGTCTGAC
AAAAATGGAAGAAAGAAAGTGATGAACTTTTCATCCATTGGTTTTGTCTTGACACACACA
TCAATTGCTGCAGTTTGCTATTATTCAGACTATATTAATCCTTTAAATCCATGGATTTAC
ATAATTTGTTATATTCCTGTTAATTTCCTTGGTGGATTTGCATCAATGTCAACTGCTATA
ATTTGTTATATCACTGACAATTGTGAAGAATCAAAGCGATCTTTTCATTTCATTATTATT
AAATATATGAATAATTTTAGTTTTGTTTTTGGTGTTTTATCATGCTCGTTCATTTTAAAT
TTTTCCAATCCTACTGTTTTGTATACAATTGCTGCTATCTGTACAATATTAGGTAAATTT
ATCATAACAATATCTGTTGATGAATCAGTGCAAATAATAGAAAATTCAAGAACAACTTTG
ATGAGCATTTTATCATTTGGACACATTATAGAAATGATTAAAACTTGTTTTATGCCAAGA
ATTTTTTATGGAAGATCAATTTTATTATGTTTAATTTTGACTATGGCATTGAATAAATTT
ACAAGTGCTTGTTGGGAAAACGTTGGATATTTATTCGCACGAGAAACTTTAAATTGGACT
TTAGAAGAGCAAAACTATCTTGATGCATCAACTTTTGCAATTGCTTCTTTCGGAACATTT
TTTTCAATTTATGTGTTTCAAACAAATTTGGGATTTTCTGACATAATTTTGATAAGTTTT
GCAATCTTTGGAAGTTTTATTGATTTTATTTTGAGAGCTTTTGCGAATCAATCTTGGCAA
ATGTATGCAATATCATTTATTTCTTGTATGAAAATGATCGTTAATCCTTTATGTAGAAGT
TTAATTTCATTGGTAATCTCAAAGAATGAAATGGGAAAAGTCATGAGTTTCACATCATCA
GTTGATTCACTTGCAGTTGTCATTGCATCACCAATTTTTATTTCGATTTACCAAGCAACT
TATACAACTTTTGCAGGAGCATTTTTTCTTGTTTGTGCTGCAATATGCTTTGTAAATTTA
TTCATAGTTTTTTATGTGATGATAGCAAAGCAAATAACTTCGAATATTAAAAATAAATAT
ATTGAAATTGAATAA
>g12692.t1 Gene=g12692 Length=464
MSSSQNSNQFKLYLLESSLFLFNFATVLSSSLLLNQLLKQFCIQFGYEKSLCDVISENNN
STADIEEELQSHVTNIILLKNILNSSVPAILQLFLGPWSDKNGRKKVMNFSSIGFVLTHT
SIAAVCYYSDYINPLNPWIYIICYIPVNFLGGFASMSTAIICYITDNCEESKRSFHFIII
KYMNNFSFVFGVLSCSFILNFSNPTVLYTIAAICTILGKFIITISVDESVQIIENSRTTL
MSILSFGHIIEMIKTCFMPRIFYGRSILLCLILTMALNKFTSACWENVGYLFARETLNWT
LEEQNYLDASTFAIASFGTFFSIYVFQTNLGFSDIILISFAIFGSFIDFILRAFANQSWQ
MYAISFISCMKMIVNPLCRSLISLVISKNEMGKVMSFTSSVDSLAVVIASPIFISIYQAT
YTTFAGAFFLVCAAICFVNLFIVFYVMIAKQITSNIKNKYIEIE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 16 | g12692.t1 | Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 75 | 447 | 1.3E-25 |
| 2 | g12692.t1 | PANTHER | PTHR23507 | ZGC:174356 | 10 | 446 | 2.9E-61 |
| 3 | g12692.t1 | PANTHER | PTHR23507:SF1 | ZGC:174356 | 10 | 446 | 2.9E-61 |
| 1 | g12692.t1 | Pfam | PF07690 | Major Facilitator Superfamily | 85 | 409 | 5.4E-21 |
| 24 | g12692.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 11 | - |
| 32 | g12692.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 12 | 34 | - |
| 20 | g12692.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 35 | 109 | - |
| 31 | g12692.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 110 | 132 | - |
| 23 | g12692.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 133 | 137 | - |
| 29 | g12692.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 138 | 165 | - |
| 21 | g12692.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 166 | 176 | - |
| 37 | g12692.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 177 | 199 | - |
| 27 | g12692.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 200 | 204 | - |
| 38 | g12692.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 205 | 226 | - |
| 22 | g12692.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 227 | 261 | - |
| 34 | g12692.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 262 | 281 | - |
| 25 | g12692.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 282 | 305 | - |
| 30 | g12692.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 306 | 326 | - |
| 19 | g12692.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 327 | 334 | - |
| 39 | g12692.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 335 | 355 | - |
| 26 | g12692.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 356 | 360 | - |
| 33 | g12692.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 361 | 382 | - |
| 18 | g12692.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 383 | 393 | - |
| 36 | g12692.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 394 | 417 | - |
| 28 | g12692.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 418 | 422 | - |
| 35 | g12692.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 423 | 448 | - |
| 17 | g12692.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 449 | 464 | - |
| 15 | g12692.t1 | SUPERFAMILY | SSF103473 | MFS general substrate transporter | 82 | 447 | 1.7E-30 |
| 6 | g12692.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 13 | 35 | - |
| 9 | g12692.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 110 | 132 | - |
| 5 | g12692.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 142 | 164 | - |
| 12 | g12692.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 177 | 199 | - |
| 7 | g12692.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 204 | 226 | - |
| 13 | g12692.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 261 | 283 | - |
| 11 | g12692.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 309 | 326 | - |
| 4 | g12692.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 329 | 351 | - |
| 10 | g12692.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 361 | 383 | - |
| 8 | g12692.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 395 | 417 | - |
| 14 | g12692.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 427 | 449 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0055085 | transmembrane transport | BP |
| GO:0022857 | transmembrane transporter activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed