General information for g12698.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Probable phosphomannomutase.
Parent gene
- The parent gene g12698 is located on chr_1: 25329666..25330477 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g12698 | g12698.t2 | isoform | g12698.t2 | 25329587 | 25330477 |
| chr_1 | g12698 | g12698.t2 | exon | g12698.t2.exon1 | 25329587 | 25330477 |
| chr_1 | g12698 | g12698.t2 | TTS | g12698.t2 | 25329618 | 25329618 |
| chr_1 | g12698 | g12698.t2 | cds | g12698.t2.CDS1 | 25329666 | 25330037 |
| chr_1 | g12698 | g12698.t2 | TSS | g12698.t2 | 25330520 | 25330520 |
Sequences
>g12698.t2 Gene=g12698 Length=891
ATGTTAGAATTAAAACGTGATGAAATTTTATTACTTTTTGATATTGATAATACTTTGACA
TTACCGCGAGATGTGATTGACCCAGAATTTGAAAAATTTCTTTATGAGAAAATTAAGCCA
TTAGCAAAAATTGCAATTGTCACGGGAGCTGATTTACCAAAAATTTATGAACAAATGAAT
GGTGAAAAAATTCTAAAAGAATTCGATTATATTTTTCCTGAAAATGGTATTGTTCACATT
GAGAATGATGTAGAAGTACAAAAGTCATCATTTAGTGAAAAATTAGGCGAAGAAATTCTT
ACTTCTTTCATAGATTTTTCTTTACGATACATTGCTGACTTAAAGCTTCCATTTAAAAGA
GGAACTTTCTTAGAATATCGAAATGGTAAAGAAATTTTATTACAATTTAGAAACTTTTAA
CATTTTATACCTAAATAGGAATGATCAATATTGCACCATGTGGACGTCAATGCACAAAAG
AAGAGCGAAAAATTTTCAGTGATTTTGATAAAAAGCATCATGTAAGAACAAAAATGATTG
AAGCTTTAAAGGAAAAATTTCATGATATTGATTTAACTTATGCCATTGGTGGTCAAATTT
CTTTTGATATTTATCCAAAAGGATGGGACAAAAGTTTTTGTCTCACTCGACTTCCATGTG
ATAAATTCAAAGAAATTCATTTCTTTGGTGATCAAACAAAATTAGGAGGAAATGACCATG
AAATTTATGAACATGAGCTCACAATTGGACATCATGTTGATAGTTATAAAGATACTGAAA
GAATTTTATCAGAAATGTTCAAATTAAAATAAAAATCAAATTTTTAAAATAAAAACCATT
CAAAATTTACAAATTAATAAAAATGACATTTTAATTTTATTTTAACATGAT
>g12698.t2 Gene=g12698 Length=123
MINIAPCGRQCTKEERKIFSDFDKKHHVRTKMIEALKEKFHDIDLTYAIGGQISFDIYPK
GWDKSFCLTRLPCDKFKEIHFFGDQTKLGGNDHEIYEHELTIGHHVDSYKDTERILSEMF
KLK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g12698.t2 | Gene3D | G3DSA:3.40.50.1000 | - | 6 | 122 | 0 |
| 2 | g12698.t2 | PANTHER | PTHR10466 | PHOSPHOMANNOMUTASE | 1 | 121 | 0 |
| 3 | g12698.t2 | PANTHER | PTHR10466:SF8 | PHOSPHOMANNOMUTASE-RELATED | 1 | 121 | 0 |
| 1 | g12698.t2 | Pfam | PF03332 | Eukaryotic phosphomannomutase | 1 | 121 | 0 |
| 4 | g12698.t2 | SUPERFAMILY | SSF56784 | HAD-like | 1 | 119 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004615 | phosphomannomutase activity | MF |
| GO:0009298 | GDP-mannose biosynthetic process | BP |
KEGG
Orthology
- This transcript has been annotated with K17497 (phosphomannomutase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
