General information for g12714.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Actin-like protein 6A.
Parent gene
- The parent gene g12714 is located on chr_1: 25431522..25432127 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g12714 | g12714.t1 | TTS | g12714.t1 | 25430563 | 25430563 |
| chr_1 | g12714 | g12714.t1 | isoform | g12714.t1 | 25430712 | 25432127 |
| chr_1 | g12714 | g12714.t1 | exon | g12714.t1.exon1 | 25430712 | 25431778 |
| chr_1 | g12714 | g12714.t1 | cds | g12714.t1.CDS1 | 25430712 | 25431778 |
| chr_1 | g12714 | g12714.t1 | exon | g12714.t1.exon2 | 25431847 | 25431958 |
| chr_1 | g12714 | g12714.t1 | cds | g12714.t1.CDS2 | 25431847 | 25431958 |
| chr_1 | g12714 | g12714.t1 | exon | g12714.t1.exon3 | 25432035 | 25432127 |
| chr_1 | g12714 | g12714.t1 | cds | g12714.t1.CDS3 | 25432035 | 25432127 |
| chr_1 | g12714 | g12714.t1 | TSS | g12714.t1 | 25432184 | 25432184 |
Sequences
>g12714.t1 Gene=g12714 Length=1272
ATGAGTCAACAAGGCATTCTCTATGGTGGTGATGAAATTGGAGCGTTAGTTTTCGATCCA
GGCCATCAGTCATTGAGATTGGGATTTGCACAAGAAGATTCTCCGAAATCAGAAATCCCT
TCAGTTGTTGGTGTTGGACCAAATACATCTGCAAATGGAATCACTGAGCCTGAAATTAAA
AGCGATAATAACATTACTCCTTCTCATAAATATTACATTGATACAACATTTTTAAATGTA
CCACGATCAAATATGGAGATAAAAACATATATGAAAGATGGAATGATTGATGATTGGGAT
TTATTTGAAAAAGTTTTGGATTATGCATACAAAAAAGTCATCATGTCTGAATCTGAACTT
CATCCAGTATTATTTTCTGAGGCATCATGGAATACTCGTCAGAATCGAGAGAAACTAACA
GAATTGATGTTTGAAAAGTATAATGTACCAGCATTTTTCTTGGTAAAAAATGCAGTGTTG
GCTTCATTTGCAAATGGACGTGCAACTGCTCTTGTGGTTGACAGTGGAGCAAAGCACACT
TCAGTTGTTCCAGTTCATGAAGGATATGTCCTCTCACAAGCAGTCGTTAAATCACCATTA
GGCGGTGATTATTTGTCAATGCAATGTCGTCATCATCTTGAAACTCAAGGAATCGATCTC
ACACTTGGATATGCAATTTCTGGTAAAGATGTTGTAAAAGAACGGGATATACCACGCTAT
GTTAAAAGAACATTACCAGAAAACTTAACTACATCTTGGCAAAATTATATGTTGAGACAG
CAATTACAAGATTTTCAATCAACAGTTGTTCAAGTTTTAGAGTCTCCCTATGATGAGCGC
ATTGCTTCACAAATTCCTGCTGTTCATTATGAATTTCCCACTGGATATCATCAAGATTTC
GGTTCTGAGAGGTTTAAACTTGCTGAAAATCTTTTTGATAATACAATGCTTGGAGCTGGT
CAATTAGCTTCAACTTGTGTTTCAAATTGTGATGCTGACGTACGTTTGGCATTATATGGG
TCAGTTGTGGTCACAGGAGGAAACAGTTTACTTCCAGGTTTTGCAGAACGACTCAATCGA
GATTTATCACATCGTGCACCATCAAATACAAAAATTAAAATGATTGTGGCTAATGGAACA
ATTGAAAGAAGATTTGGTGCATGGATTGGTGGCTCAATTTTAGCAAGTATCGGAACATTC
CAACAAATGTGGATTTCATCGCAAGAATATGAGGAGGGAGGCAAATCTCAAGTAGAACGT
AAATGCCCTTAA
>g12714.t1 Gene=g12714 Length=423
MSQQGILYGGDEIGALVFDPGHQSLRLGFAQEDSPKSEIPSVVGVGPNTSANGITEPEIK
SDNNITPSHKYYIDTTFLNVPRSNMEIKTYMKDGMIDDWDLFEKVLDYAYKKVIMSESEL
HPVLFSEASWNTRQNREKLTELMFEKYNVPAFFLVKNAVLASFANGRATALVVDSGAKHT
SVVPVHEGYVLSQAVVKSPLGGDYLSMQCRHHLETQGIDLTLGYAISGKDVVKERDIPRY
VKRTLPENLTTSWQNYMLRQQLQDFQSTVVQVLESPYDERIASQIPAVHYEFPTGYHQDF
GSERFKLAENLFDNTMLGAGQLASTCVSNCDADVRLALYGSVVVTGGNSLLPGFAERLNR
DLSHRAPSNTKIKMIVANGTIERRFGAWIGGSILASIGTFQQMWISSQEYEEGGKSQVER
KCP
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 13 | g12714.t1 | CDD | cd00012 | NBD_sugar-kinase_HSP70_actin | 92 | 196 | 0 |
| 11 | g12714.t1 | Gene3D | G3DSA:3.30.420.40 | - | 15 | 414 | 0 |
| 12 | g12714.t1 | Gene3D | G3DSA:3.30.420.40 | - | 158 | 386 | 0 |
| 10 | g12714.t1 | Gene3D | G3DSA:3.90.640.10 | Actin; Chain A | 201 | 316 | 0 |
| 2 | g12714.t1 | PANTHER | PTHR11937:SF487 | ACTIN-LIKE PROTEIN 6A | 10 | 421 | 0 |
| 3 | g12714.t1 | PANTHER | PTHR11937 | ACTIN | 10 | 421 | 0 |
| 5 | g12714.t1 | PRINTS | PR00190 | Actin signature | 34 | 43 | 0 |
| 4 | g12714.t1 | PRINTS | PR00190 | Actin signature | 135 | 148 | 0 |
| 6 | g12714.t1 | PRINTS | PR00190 | Actin signature | 160 | 179 | 0 |
| 1 | g12714.t1 | Pfam | PF00022 | Actin | 10 | 422 | 0 |
| 9 | g12714.t1 | SMART | SM00268 | actin_3 | 13 | 423 | 0 |
| 8 | g12714.t1 | SUPERFAMILY | SSF53067 | Actin-like ATPase domain | 11 | 173 | 0 |
| 7 | g12714.t1 | SUPERFAMILY | SSF53067 | Actin-like ATPase domain | 166 | 422 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K11652 (actin-like protein 6B)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
