General information for g12714.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Actin-like protein 6B.
Parent gene
- The parent gene g12714 is located on chr_1: 25431522..25432127 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g12714 | g12714.t3 | TTS | g12714.t3 | 25430563 | 25430563 |
| chr_1 | g12714 | g12714.t3 | isoform | g12714.t3 | 25430712 | 25432127 |
| chr_1 | g12714 | g12714.t3 | exon | g12714.t3.exon1 | 25430712 | 25431778 |
| chr_1 | g12714 | g12714.t3 | cds | g12714.t3.CDS1 | 25430712 | 25431713 |
| chr_1 | g12714 | g12714.t3 | exon | g12714.t3.exon2 | 25431847 | 25432127 |
| chr_1 | g12714 | g12714.t3 | TSS | g12714.t3 | 25432184 | 25432184 |
Sequences
>g12714.t3 Gene=g12714 Length=1348
ATGAGTCAACAAGGCATTCTCTATGGTGGTGATGAAATTGGAGCGTTAGTTTTCGATCCA
GGCCATCAGTCATTGAGATTGGGATTTGCACAAGTAAGTTATTTATTGAATTTTCAGTGA
TTTTTCATTTCAAGCATTTTTTCTAAACAAATTTTAAAAATGTTCATAGGAAGATTCTCC
GAAATCAGAAATCCCTTCAGTTGTTGGTGTTGGACCAAATACATCTGCAAATGGAATCAC
TGAGCCTGAAATTAAAAGCGATAATAACATTACTCCTTCTCATAAATATTACATTGATAC
AACATTTTTAAATGTACCACGATCAAATATGGAGATAAAAACATATATGAAAGATGGAAT
GATTGATGATTGGGATTTATTTGAAAAAGTTTTGGATTATGCATACAAAAAAGTCATCAT
GTCTGAATCTGAACTTCATCCAGTATTATTTTCTGAGGCATCATGGAATACTCGTCAGAA
TCGAGAGAAACTAACAGAATTGATGTTTGAAAAGTATAATGTACCAGCATTTTTCTTGGT
AAAAAATGCAGTGTTGGCTTCATTTGCAAATGGACGTGCAACTGCTCTTGTGGTTGACAG
TGGAGCAAAGCACACTTCAGTTGTTCCAGTTCATGAAGGATATGTCCTCTCACAAGCAGT
CGTTAAATCACCATTAGGCGGTGATTATTTGTCAATGCAATGTCGTCATCATCTTGAAAC
TCAAGGAATCGATCTCACACTTGGATATGCAATTTCTGGTAAAGATGTTGTAAAAGAACG
GGATATACCACGCTATGTTAAAAGAACATTACCAGAAAACTTAACTACATCTTGGCAAAA
TTATATGTTGAGACAGCAATTACAAGATTTTCAATCAACAGTTGTTCAAGTTTTAGAGTC
TCCCTATGATGAGCGCATTGCTTCACAAATTCCTGCTGTTCATTATGAATTTCCCACTGG
ATATCATCAAGATTTCGGTTCTGAGAGGTTTAAACTTGCTGAAAATCTTTTTGATAATAC
AATGCTTGGAGCTGGTCAATTAGCTTCAACTTGTGTTTCAAATTGTGATGCTGACGTACG
TTTGGCATTATATGGGTCAGTTGTGGTCACAGGAGGAAACAGTTTACTTCCAGGTTTTGC
AGAACGACTCAATCGAGATTTATCACATCGTGCACCATCAAATACAAAAATTAAAATGAT
TGTGGCTAATGGAACAATTGAAAGAAGATTTGGTGCATGGATTGGTGGCTCAATTTTAGC
AAGTATCGGAACATTCCAACAAATGTGGATTTCATCGCAAGAATATGAGGAGGGAGGCAA
ATCTCAAGTAGAACGTAAATGCCCTTAA
>g12714.t3 Gene=g12714 Length=333
MKDGMIDDWDLFEKVLDYAYKKVIMSESELHPVLFSEASWNTRQNREKLTELMFEKYNVP
AFFLVKNAVLASFANGRATALVVDSGAKHTSVVPVHEGYVLSQAVVKSPLGGDYLSMQCR
HHLETQGIDLTLGYAISGKDVVKERDIPRYVKRTLPENLTTSWQNYMLRQQLQDFQSTVV
QVLESPYDERIASQIPAVHYEFPTGYHQDFGSERFKLAENLFDNTMLGAGQLASTCVSNC
DADVRLALYGSVVVTGGNSLLPGFAERLNRDLSHRAPSNTKIKMIVANGTIERRFGAWIG
GSILASIGTFQQMWISSQEYEEGGKSQVERKCP
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 12 | g12714.t3 | CDD | cd00012 | NBD_sugar-kinase_HSP70_actin | 2 | 106 | 0.0e+00 |
| 10 | g12714.t3 | Gene3D | G3DSA:3.30.420.40 | - | 1 | 324 | 0.0e+00 |
| 11 | g12714.t3 | Gene3D | G3DSA:3.30.420.40 | - | 68 | 296 | 0.0e+00 |
| 9 | g12714.t3 | Gene3D | G3DSA:3.90.640.10 | Actin; Chain A | 111 | 226 | 0.0e+00 |
| 2 | g12714.t3 | PANTHER | PTHR11937:SF487 | ACTIN-LIKE PROTEIN 6A | 1 | 331 | 0.0e+00 |
| 3 | g12714.t3 | PANTHER | PTHR11937 | ACTIN | 1 | 331 | 0.0e+00 |
| 5 | g12714.t3 | PRINTS | PR00190 | Actin signature | 45 | 58 | 5.2e-06 |
| 4 | g12714.t3 | PRINTS | PR00190 | Actin signature | 70 | 89 | 5.2e-06 |
| 1 | g12714.t3 | Pfam | PF00022 | Actin | 1 | 332 | 0.0e+00 |
| 8 | g12714.t3 | SMART | SM00268 | actin_3 | 1 | 333 | 0.0e+00 |
| 7 | g12714.t3 | SUPERFAMILY | SSF53067 | Actin-like ATPase domain | 1 | 83 | 0.0e+00 |
| 6 | g12714.t3 | SUPERFAMILY | SSF53067 | Actin-like ATPase domain | 76 | 332 | 0.0e+00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
