General information for g12723.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g12723 is located on chr_1: 25464478..25465894 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g12723 | g12723.t3 | isoform | g12723.t3 | 25464478 | 25465894 |
| chr_1 | g12723 | g12723.t3 | exon | g12723.t3.exon1 | 25464478 | 25465894 |
| chr_1 | g12723 | g12723.t3 | cds | g12723.t3.CDS1 | 25464511 | 25465599 |
| chr_1 | g12723 | g12723.t3 | TSS | g12723.t3 | NA | NA |
| chr_1 | g12723 | g12723.t3 | TTS | g12723.t3 | NA | NA |
Sequences
>g12723.t3 Gene=g12723 Length=1417
AGATATGATCCGCAAATTCGTTTGCAAATTAAAATGATTGTTTTCAATGCACTTATATTG
AATTATTCAAATATTGCTGTGAATTTAACAGAAGAGCAAGAGTATGAGAAGAGAGGTGAA
ATATGTCAACAATACGTTGCATTTATTAGTTACAAATTTCTTTCTGCAAATATTACAACT
AATCATGTGACTGTGAGAGAAGAAATTCGTGCTGAATTAAAAGACTATGAACATATTTTA
AATACATATGAGGACACCAACAACTTTTCAAAACAAATTCTTCTCGGTGCAATTAATCCA
ATTATCAAGAAATCAATCGAAATATTCCAATTTACTGCCAAATCAAGTTACCAATACGAT
GAAAACGATTTGACTGCAATTATTGATTTCAATTTGAGCATTGTCAAATGTTTACAGATG
CAATTGGGTTCTGATTTTGTGATAAATATTGTGAGACTGTTTTTAGAAGTAGCATCTACA
CCAAATAGAAGTACACACGCGTTGAATAAACTTTTGGAAATGTTAATTTACATTGTTCAA
CACACTGGTGCAACATCGACTCAACTTTTGCCAGACATTCTCAAATTAACACTTGATGAT
CTCTTGCGTGCAAACGTCGATATTTCATTTAATTTATTCTCACTCTATGATTCCATTCTA
CAAAATCATTGGAATTATTTTCAAAAGAATATTCCAAACAATATGAGAAATAACCAAGAA
GATTTGATGAAAATTCTCACAACTTATGGTCATTTTTTGTGCAATACACCGATAGATGCG
AATGTTGGTCGTGTAATTTTGAATTCATTAGAAAAATTGCATGAAAAATGGCGATTGTAT
GATAAAGCATTTTTCAATAATTCGCTTCTTAGATCATTTTTATGTACTCTCTTGCGCTTA
ATTATTTCTCCAGAAGGAATTCTTTTCTATGATCAAATTATATCGATAATATTTTACATG
TCTGAGCAGAATAAGGTTGTGCTGCAAGAATGCTTTGCATCAGTATTAACAGATAAAGAG
AAAATTGTTCAAATATGTCAAGTAACTGATGTGTGTACGTTTTCTCGTCTTATGGAAATT
ATTATTCAAGACATTCATGTTGTGTCACAGCAACATCATTAGTAGAAATAATCGCTTTGC
ATTTTAAAATCGAATAACGTGTATTACTTCGATGCTTTCTTTAGTCATTTGTACGCATTT
GAAAATTTTTTTAAAGATTTTTGTCAACTTGTCATTATTTTATATGTACACTTTATATTT
TTCTGTGTATTAAATGGTACTAAGAAATTCTAATGTAAAACATGATTTTTTTATGAGATG
AATTATTTTACGTAAGCACAATAAAGTTTTTATTGAATAAAGAATACATAGAATAAAGGA
ATTTTATTTAAAACACATACACCCATTTTGAAGCCTC
>g12723.t3 Gene=g12723 Length=362
MIVFNALILNYSNIAVNLTEEQEYEKRGEICQQYVAFISYKFLSANITTNHVTVREEIRA
ELKDYEHILNTYEDTNNFSKQILLGAINPIIKKSIEIFQFTAKSSYQYDENDLTAIIDFN
LSIVKCLQMQLGSDFVINIVRLFLEVASTPNRSTHALNKLLEMLIYIVQHTGATSTQLLP
DILKLTLDDLLRANVDISFNLFSLYDSILQNHWNYFQKNIPNNMRNNQEDLMKILTTYGH
FLCNTPIDANVGRVILNSLEKLHEKWRLYDKAFFNNSLLRSFLCTLLRLIISPEGILFYD
QIISIIFYMSEQNKVVLQECFASVLTDKEKIVQICQVTDVCTFSRLMEIIIQDIHVVSQQ
HH
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g12723.t3 | Coils | Coil | Coil | 55 | 75 | - |
| 1 | g12723.t3 | PANTHER | PTHR21452 | EXPORTIN-6 | 3 | 358 | 2.4E-41 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005049 | nuclear export signal receptor activity | MF |
| GO:0006611 | protein export from nucleus | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
