General information for g12733.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Aldo-keto reductase family 1 member A1-A.
Parent gene
- The parent gene g12733 is located on chr_1: 25516027..25517625 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g12733 | g12733.t1 | isoform | g12733.t1 | 25516027 | 25517625 |
| chr_1 | g12733 | g12733.t1 | exon | g12733.t1.exon1 | 25516027 | 25516067 |
| chr_1 | g12733 | g12733.t1 | cds | g12733.t1.CDS1 | 25516027 | 25516067 |
| chr_1 | g12733 | g12733.t1 | exon | g12733.t1.exon2 | 25516121 | 25516697 |
| chr_1 | g12733 | g12733.t1 | cds | g12733.t1.CDS2 | 25516121 | 25516697 |
| chr_1 | g12733 | g12733.t1 | exon | g12733.t1.exon3 | 25517499 | 25517509 |
| chr_1 | g12733 | g12733.t1 | cds | g12733.t1.CDS3 | 25517499 | 25517509 |
| chr_1 | g12733 | g12733.t1 | exon | g12733.t1.exon4 | 25517574 | 25517625 |
| chr_1 | g12733 | g12733.t1 | cds | g12733.t1.CDS4 | 25517574 | 25517625 |
| chr_1 | g12733 | g12733.t1 | TSS | g12733.t1 | 25517702 | 25517702 |
| chr_1 | g12733 | g12733.t1 | TTS | g12733.t1 | NA | NA |
Sequences
>g12733.t1 Gene=g12733 Length=681
ATGACAACTATTACATTAAATAATGGAAAAGAATTTCCAGTTGTTGGTTTTGGAACTTCA
CGAACATCATCGGGTGTTATCATTCAAGCAGTAAAGGATGCAATTGATGCTGGATATCGT
CATATTGATTGTGCTCACATTTATGGTAATGAGCATGAAGTTGGTGAAGCAATTAATGCA
AAAATCGCTGAAGGTATCGTCAAGCGTGAAGATCTTTTTGTAGTTTCAAAACTTTGGAAT
TGTTTTCATGAACCAAAAGAAGTTAAGCCAGCACTTGAACATTCATTGAAGCAACTAAAT
TTAGACTATCTTGACTTGTACCTCATTCATTGGCCTATTTGTTATCAAAAATCTAATGAA
CTTTGCCCAACAAATGAAGCTGGTGAAATTCTCTATGGAAACACTGATATTCTTGACACT
TATCGTGCAATGGAAGAACTTGTTGATGCTGGATTGACTAAAAGTATTGGAATTTCAAAC
TTTAATATCAAACAAATTGATTACATTACTAAAAATGCTCGCATTCAACCAGTCACCAAT
CAAGTTGAATGTCATCCATATTTACTTAATAAAAAATTATCTGATTTCTGCAAAAGCAAG
AATATTGTAATCACTGCTTATGCACCACTTGGATCACCAGCTCGTCCACGGGCAACGCCA
GATTATCATGTGCTTTTATAA
>g12733.t1 Gene=g12733 Length=226
MTTITLNNGKEFPVVGFGTSRTSSGVIIQAVKDAIDAGYRHIDCAHIYGNEHEVGEAINA
KIAEGIVKREDLFVVSKLWNCFHEPKEVKPALEHSLKQLNLDYLDLYLIHWPICYQKSNE
LCPTNEAGEILYGNTDILDTYRAMEELVDAGLTKSIGISNFNIKQIDYITKNARIQPVTN
QVECHPYLLNKKLSDFCKSKNIVITAYAPLGSPARPRATPDYHVLL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 11 | g12733.t1 | Gene3D | G3DSA:3.20.20.100 | - | 1 | 226 | 1.6E-94 |
| 2 | g12733.t1 | PANTHER | PTHR11732:SF482 | ZGC:56622 | 3 | 218 | 4.9E-89 |
| 3 | g12733.t1 | PANTHER | PTHR11732 | ALDO/KETO REDUCTASE | 3 | 218 | 4.9E-89 |
| 12 | g12733.t1 | PIRSF | PIRSF000097 | AKR | 1 | 226 | 1.8E-95 |
| 5 | g12733.t1 | PRINTS | PR00069 | Aldo-keto reductase signature | 34 | 58 | 8.5E-48 |
| 6 | g12733.t1 | PRINTS | PR00069 | Aldo-keto reductase signature | 94 | 112 | 8.5E-48 |
| 7 | g12733.t1 | PRINTS | PR00069 | Aldo-keto reductase signature | 144 | 161 | 8.5E-48 |
| 4 | g12733.t1 | PRINTS | PR00069 | Aldo-keto reductase signature | 178 | 207 | 8.5E-48 |
| 1 | g12733.t1 | Pfam | PF00248 | Aldo/keto reductase family | 17 | 215 | 1.1E-42 |
| 10 | g12733.t1 | ProSitePatterns | PS00798 | Aldo/keto reductase family signature 1. | 38 | 55 | - |
| 9 | g12733.t1 | ProSitePatterns | PS00062 | Aldo/keto reductase family signature 2. | 144 | 161 | - |
| 8 | g12733.t1 | SUPERFAMILY | SSF51430 | NAD(P)-linked oxidoreductase | 2 | 218 | 2.62E-74 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0047834 | D-threo-aldose 1-dehydrogenase activity | MF |
| GO:0055114 | NA | NA |
| GO:0016491 | oxidoreductase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
