General information for g12752.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative protein kinase C delta type-like protein.
Parent gene
- The parent gene g12752 is located on chr_1: 25766500..25770087 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g12752 | g12752.t1 | isoform | g12752.t1 | 25761071 | 25770087 |
| chr_1 | g12752 | g12752.t1 | exon | g12752.t1.exon1 | 25761071 | 25761160 |
| chr_1 | g12752 | g12752.t1 | cds | g12752.t1.CDS1 | 25761071 | 25761160 |
| chr_1 | g12752 | g12752.t1 | exon | g12752.t1.exon2 | 25761582 | 25761871 |
| chr_1 | g12752 | g12752.t1 | cds | g12752.t1.CDS2 | 25761582 | 25761871 |
| chr_1 | g12752 | g12752.t1 | exon | g12752.t1.exon3 | 25761937 | 25762033 |
| chr_1 | g12752 | g12752.t1 | cds | g12752.t1.CDS3 | 25761937 | 25762033 |
| chr_1 | g12752 | g12752.t1 | exon | g12752.t1.exon4 | 25762131 | 25762149 |
| chr_1 | g12752 | g12752.t1 | cds | g12752.t1.CDS4 | 25762131 | 25762149 |
| chr_1 | g12752 | g12752.t1 | exon | g12752.t1.exon5 | 25763295 | 25763380 |
| chr_1 | g12752 | g12752.t1 | cds | g12752.t1.CDS5 | 25763295 | 25763380 |
| chr_1 | g12752 | g12752.t1 | exon | g12752.t1.exon6 | 25763482 | 25763566 |
| chr_1 | g12752 | g12752.t1 | cds | g12752.t1.CDS6 | 25763482 | 25763566 |
| chr_1 | g12752 | g12752.t1 | exon | g12752.t1.exon7 | 25763729 | 25763773 |
| chr_1 | g12752 | g12752.t1 | cds | g12752.t1.CDS7 | 25763729 | 25763773 |
| chr_1 | g12752 | g12752.t1 | exon | g12752.t1.exon8 | 25766035 | 25769940 |
| chr_1 | g12752 | g12752.t1 | cds | g12752.t1.CDS8 | 25766035 | 25769940 |
| chr_1 | g12752 | g12752.t1 | exon | g12752.t1.exon9 | 25770068 | 25770087 |
| chr_1 | g12752 | g12752.t1 | cds | g12752.t1.CDS9 | 25770068 | 25770087 |
| chr_1 | g12752 | g12752.t1 | TSS | g12752.t1 | NA | NA |
| chr_1 | g12752 | g12752.t1 | TTS | g12752.t1 | NA | NA |
Sequences
>g12752.t1 Gene=g12752 Length=4638
ATGATATTTACTGGTAATCATGGTCGAAGACGAGCACAAAGCAATGGACAGAATCAGTAT
AGCCAAAGAAAACGAAGTTCAAATAGTGATGGACGAAGCAAAAGTTCATCATCGTCTTCA
TCATCATCATCGAGATTGCCATTGTGTTCTCGAGATTCATCAAGCCATAATTCTTCTTAT
TTGCATTCCCATTCTTCCTCTTCTTCATCATCAATGCCACCTAATTATTACACTACACTA
CCGCGAACAAGCACAAATTCAACATACATGACAATACCGGAACTCGATGAAGAACCAAAA
CATGACTTTTATTTGCAAAAAACGAGAGCAAGAGATATTACAAAACGCCGTGGTGCCATA
AAACTTATCCAACGATTAAAAATTCACGAAGTTAATGGACACAAATTTATCTCAAAATTC
TTTCGTCAGCCCACCTTCTGTGCTTACTGTAAAGAATTTCTTTGGGGATTTAATAAGCAA
GGATATCAATGTAAAACATGTCTCACGGCAGTACACAAACGATGTCATGATAAATTATTG
GGAACATGCTCAGAATCTAGTTTTAACTCTGAAAGTACAATTTATTTAAGGGAACGATTT
AAAATTGACTTGCCTCATCGATTTAAGGTTTATACGTTTATGAGCCCAACATTTTGTGAT
CATTGTGGATCGCTACTTTATGGATTCTTTCGACAAGGCTTAAAATGTGAAGCAAAAATG
CCTCTCTATTCTGATATGTATTACAATTATATCAATCCACTGTCGTCATCTACTAGTAAT
TATTCTTCAAATCCACCTAGTTATGGATCTAGTTCTTCCAATTATTCTTCTTTGTCTTAT
ACACCTTCATTACGTAGTGGTGTCACAAGTACTCGATTTTTACCCAAATTAACAACTATA
TCAGAAACACCGCTTACAAAACATCGAATTGCTGCCTTGACACGCATCGCTGCATCTACG
CCAAAATATATTCCACCTCGACCGCGTCACATTGACACATCACAAATTGACGTATCGGCC
AATCGCTTTGGCAATCGTCGCAAGCAAACAATTAATGAAAATGAACAGATCAAAGTGCAG
CGAATGCATGATTCGAATGATGAAAATCCCTCAGGCGCTCGTAGCACAATTAGACGTGAT
CGTGGACTTGTGCGGCTTAGAACAATTCATATGCCAAAGAAAGAAGAAGAAAAGAAACCA
GCGGTAAAAATTGAAACACAAAATGACATCGATCCAGGCTATGGCTCAAGTGAAAGATCG
AGTGGATCATGGCGGAAGAAGTTGGACGTTGATTTTGATTTTAGAAAAGAACCAACATCA
CCTACAAGCAAAACATTTGGTGAAAGTTTTCTTGAAAAGTACACAATTAAAGAACAACAA
AAAATAGTAACACCAAGTTATCTTACAATTGATGATGTCGATTCAATTGAAGAACGTAAT
TTTATAAGACGAAAAAGTGGCAGCAAATTGCCGACATTTAAAGAAATTTGTTCAGATATT
TCATCGGATAAATTGACTGATGATCTCAATGCTGGTGAATTAAGACGTAGAGCATCAATG
ATTATTGAAGAAGATATAAAACTTTTTAAATCTGAATCACAAATTGCATTAGCTGCATTA
GCAGCAAGTCAAAAATTATCTGATGAAGAAATAAAAGAAGTAGAAGAGGAAGAATTAAAA
AATGATGATAATGAAATTCATAAAAGTATAAAATTAAATAAAAAAATTGAAATAATTTTA
GAATTAGAACAAAGCACACCAGAAGTTGATAATTATACAGTAAAAATCCCATTGAAAAAA
AAGAAAAAACTTACAGCTATAGCGACTACCTGTGATTTAGATCCAACTATGTCAACGACA
CCACACACGAATGTGACGTCGAAAAATGAAGATGAAAATGTAATGAGAAAAATTGCGGAA
ACGCAGCCTGAGAAATCTAAACAGCAACAGCAGCAGCATTCTTTTGACCTCGATACAAAA
TTATTAATAGACAAAAGTGCAACTATTCCCGGTGAACAGACACAAGTGACGAAGAAAACA
TTAAAAAATTCAGTGAAAGTAAAGCCGCAAATGAAGTCAGAAGTACCGGTAGCACCTGGT
GTGCTTAAATTAAATCCACTCAAGCGAGATTTGAGTGCAGATGATTTTTGGGGCATGATT
GGAACACGTGAGACTGCAATTTTTTCAAAACGAAAGCAACAAGTCATTGAAGAACAAAAG
AAAAAATTGATTGAAAATTCTTGGATTGGTGAAGGGTGTGAAGATGATGCAGAATTAGCA
AAAGTAGATCAAGTGACTACTACAATTGACAGCGAGGAGAAAAATGTGACTGAAAGCGTA
GGCAGTGAAATTTCTACACTTATAAATGAAAGTGAAAACAAAAAGAAAAAACTTGTAGAA
ATAAAGAAAATTGAAAATCAAATTCAGAAAAAAATTGAACCATTGAAGAAAAATGAAGTT
TTAAAGGATGAAAAGAAAGTGATTGAAACAAAATTATTTGATGAGAAAATAACTAAAGCT
GAACCAAAAATAGACAATTTAAAATTGATTGAAGAAAAGTCTACAGTTTTAAATCAAAAT
GACTTGAAAATTAAACAGAAAGAAATTAAAACCACAACAATCAATCAAAATGATGAAAAC
ATTAAAGAATTGTCAACAATTGAAATTAAAAACCTTGAAAAAGCTGAAGAAAAACCGATA
GAAATTGAAGTTAAAAAAGCAGAGCTTAAATTAGAAAAGAAAATTGAAATAAATGTTGGA
AAATCGATACCAACGAAAACAGTCGGAAAAATTATTGAAACAAAACCAGCTGCTGTGAAA
ATTGAAAAGAAATTTGTGAAGAAGACTAAAAGTGGTGAAATTGGAGTTGTTAAAAAAGAA
GTTGAAGATAAGAAAGTTGAAAAGAAAGATTTGATTATTGATAAAAAGGAAATTGAAGTC
ACTGCTAATAAAAAGAAAGATTTGATTGGCAATAAAGTTGAAGTTTCAATTACAAAAACA
GTTGAATTAAAAATAGCTTTAGATAAGAAAGAATCAACTGAAGCAGTTGCCAAGAAAGAA
ATTGACACAAAAGTTTCTGAGAAAGTTGATAAAATTACTGAGCCAACAGAAAAATTAAAT
AAATCTACCGAAATCAATGAAAAGCCGTCAATATTAAATGATAAAAAGGAAACGTCACTT
TTGACTGATAAAAAATTACCAACTGTTGATAAGAAAACGTCAATTCTTGACAAAAAACCT
GAAGCAAAAGAATCAGAGGTCAAGAAAAATTTATTATCTGATAAGAAACTGGATTTACCA
AAAAAGAAATCAGAATCGCCTCCAAAAACCGTGCCTGAAGTTAAGAAAATTGAAACAATT
GATAAAAAATTATCGAACTTAAATAAAAATTCAACAGTTTTAGATATGAAACCTGAATTA
ATAACCAAAAAAACAGAAATTGTTGCAAAAGTTGAACCAATATCAGATAATATTAAAAAA
GTTGACATAACTACAAAGAAAGAGCCATCACAAGAGAAAAAGAAGTCAGAAATTACTGAG
AAGAAAGTTACAGACTTAAAGAAAGAATCGGTAGTGAAAAAATCACCAGAAAAAGATTTA
AAAACAGCTGTTGCTGAGAAAAAGGAAATTTTAAAACCACAAGATGATAAAATTTTGAGC
ACATCTGATCAAAATAAGAAGCCAATTGGAAAAACGACAGTGACAAATGTGAATGACCAA
CTGAAACAAAAATCAATGAATAAAGTGAAAGAGGAAAAAGAAGAATTGAATGCCACAAAT
GAAGGTGACCATCAGACTGAGAATAAGAAAACTTGTGAAGATGCAAAAGAAAAAGTTCTC
AATGAAAATCATTCAATTGACAACGCATCGGCTAGTCGACGAAGTAGTAAAAACAAAATT
AAAACACTTGGCACATTAGCGAAATTCCCAACTTTAAATAATTTAAATAGCATCGCAATG
AATGATGCATCGAGTAATGATAATAAAACAACAAGTGACAACAATCAATCAATCGTTGCT
CAGCATTTGAACGAATCAGAGCAGCAAAAAGTTAGTTGTGAGCCAGAACTTTTACAAGTC
GCGTCTCCTATTGAAGAAACAGAATCACAAGAAAGTGAACAATCAGAAGAAGAGGAATCA
TCATACGAGGAAGAAAGTAGTGAAGAGGAAGAAGAAATGGGCAAGAAAGATTTTGATCCA
CAGAAAAAGACTAAACTAGATTTCTCGAAAATGCAAAAATTCTTTGGAACTGATCAGAAA
ACAAATATCAAATTAGTCGCACGTCCAAGACCATTGTGGAAAATTAAAAGAAATCGACAT
GCAAAATTTAGTGATTCTTCAGAATCTGAAACATCAGGTGATGAAGAATGTGGTGATTCT
GCCACAGGTGGAAGTCAAAGTAGCACAAATAGTGACAAAATTATTAAACTAAAATCAAAT
GCACAAAAAAGTCAAAAATCCTCTGAAATTAGTAATGAAAATATTGTACCACTTATAGAA
AATTTAAGCATTGACGAAAGTGAAGATAAAAAGCATAGTCGATTTAGTACAAGTAGTCAT
GATTCAGGATATAGTGCAATTGGTGCTACAGCTGCAAGATCACCAAGAAAAGCTTTGGAC
GATGAAAGAAATATTTGA
>g12752.t1 Gene=g12752 Length=1545
MIFTGNHGRRRAQSNGQNQYSQRKRSSNSDGRSKSSSSSSSSSSRLPLCSRDSSSHNSSY
LHSHSSSSSSSMPPNYYTTLPRTSTNSTYMTIPELDEEPKHDFYLQKTRARDITKRRGAI
KLIQRLKIHEVNGHKFISKFFRQPTFCAYCKEFLWGFNKQGYQCKTCLTAVHKRCHDKLL
GTCSESSFNSESTIYLRERFKIDLPHRFKVYTFMSPTFCDHCGSLLYGFFRQGLKCEAKM
PLYSDMYYNYINPLSSSTSNYSSNPPSYGSSSSNYSSLSYTPSLRSGVTSTRFLPKLTTI
SETPLTKHRIAALTRIAASTPKYIPPRPRHIDTSQIDVSANRFGNRRKQTINENEQIKVQ
RMHDSNDENPSGARSTIRRDRGLVRLRTIHMPKKEEEKKPAVKIETQNDIDPGYGSSERS
SGSWRKKLDVDFDFRKEPTSPTSKTFGESFLEKYTIKEQQKIVTPSYLTIDDVDSIEERN
FIRRKSGSKLPTFKEICSDISSDKLTDDLNAGELRRRASMIIEEDIKLFKSESQIALAAL
AASQKLSDEEIKEVEEEELKNDDNEIHKSIKLNKKIEIILELEQSTPEVDNYTVKIPLKK
KKKLTAIATTCDLDPTMSTTPHTNVTSKNEDENVMRKIAETQPEKSKQQQQQHSFDLDTK
LLIDKSATIPGEQTQVTKKTLKNSVKVKPQMKSEVPVAPGVLKLNPLKRDLSADDFWGMI
GTRETAIFSKRKQQVIEEQKKKLIENSWIGEGCEDDAELAKVDQVTTTIDSEEKNVTESV
GSEISTLINESENKKKKLVEIKKIENQIQKKIEPLKKNEVLKDEKKVIETKLFDEKITKA
EPKIDNLKLIEEKSTVLNQNDLKIKQKEIKTTTINQNDENIKELSTIEIKNLEKAEEKPI
EIEVKKAELKLEKKIEINVGKSIPTKTVGKIIETKPAAVKIEKKFVKKTKSGEIGVVKKE
VEDKKVEKKDLIIDKKEIEVTANKKKDLIGNKVEVSITKTVELKIALDKKESTEAVAKKE
IDTKVSEKVDKITEPTEKLNKSTEINEKPSILNDKKETSLLTDKKLPTVDKKTSILDKKP
EAKESEVKKNLLSDKKLDLPKKKSESPPKTVPEVKKIETIDKKLSNLNKNSTVLDMKPEL
ITKKTEIVAKVEPISDNIKKVDITTKKEPSQEKKKSEITEKKVTDLKKESVVKKSPEKDL
KTAVAEKKEILKPQDDKILSTSDQNKKPIGKTTVTNVNDQLKQKSMNKVKEEKEELNATN
EGDHQTENKKTCEDAKEKVLNENHSIDNASASRRSSKNKIKTLGTLAKFPTLNNLNSIAM
NDASSNDNKTTSDNNQSIVAQHLNESEQQKVSCEPELLQVASPIEETESQESEQSEEEES
SYEEESSEEEEEMGKKDFDPQKKTKLDFSKMQKFFGTDQKTNIKLVARPRPLWKIKRNRH
AKFSDSSESETSGDEECGDSATGGSQSSTNSDKIIKLKSNAQKSQKSSEISNENIVPLIE
NLSIDESEDKKHSRFSTSSHDSGYSAIGATAARSPRKALDDERNI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 17 | g12752.t1 | CDD | cd00029 | C1 | 134 | 183 | 2.01897E-17 |
| 16 | g12752.t1 | CDD | cd00029 | C1 | 206 | 238 | 1.16236E-10 |
| 15 | g12752.t1 | Coils | Coil | Coil | 537 | 557 | - |
| 13 | g12752.t1 | Coils | Coil | Coil | 787 | 807 | - |
| 14 | g12752.t1 | Coils | Coil | Coil | 1372 | 1392 | - |
| 11 | g12752.t1 | Gene3D | G3DSA:3.30.60.20 | - | 119 | 198 | 1.6E-23 |
| 12 | g12752.t1 | Gene3D | G3DSA:3.30.60.20 | - | 202 | 250 | 1.1E-12 |
| 34 | g12752.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 75 | - |
| 23 | g12752.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 8 | 75 | - |
| 28 | g12752.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 394 | 422 | - |
| 25 | g12752.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1030 | 1059 | - |
| 29 | g12752.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1071 | 1113 | - |
| 22 | g12752.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1164 | 1404 | - |
| 30 | g12752.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1164 | 1222 | - |
| 27 | g12752.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1223 | 1243 | - |
| 26 | g12752.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1244 | 1283 | - |
| 33 | g12752.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1284 | 1355 | - |
| 21 | g12752.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1369 | 1392 | - |
| 32 | g12752.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1418 | 1545 | - |
| 31 | g12752.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1456 | 1498 | - |
| 24 | g12752.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1503 | 1517 | - |
| 3 | g12752.t1 | PANTHER | PTHR24356:SF365 | PROTEIN KINASE C DELTA TYPE | 109 | 236 | 2.6E-42 |
| 4 | g12752.t1 | PANTHER | PTHR24356 | SERINE/THREONINE-PROTEIN KINASE | 109 | 236 | 2.6E-42 |
| 7 | g12752.t1 | PRINTS | PR00008 | Diacylglycerol/phorbol-ester binding signature | 131 | 145 | 6.6E-10 |
| 5 | g12752.t1 | PRINTS | PR00008 | Diacylglycerol/phorbol-ester binding signature | 147 | 156 | 6.6E-10 |
| 8 | g12752.t1 | PRINTS | PR00008 | Diacylglycerol/phorbol-ester binding signature | 160 | 171 | 6.6E-10 |
| 6 | g12752.t1 | PRINTS | PR00008 | Diacylglycerol/phorbol-ester binding signature | 172 | 184 | 6.6E-10 |
| 1 | g12752.t1 | Pfam | PF00130 | Phorbol esters/diacylglycerol binding domain (C1 domain) | 134 | 183 | 5.1E-14 |
| 2 | g12752.t1 | Pfam | PF00130 | Phorbol esters/diacylglycerol binding domain (C1 domain) | 206 | 237 | 4.1E-7 |
| 20 | g12752.t1 | ProSitePatterns | PS00479 | Zinc finger phorbol-ester/DAG-type signature. | 134 | 183 | - |
| 36 | g12752.t1 | ProSiteProfiles | PS50081 | Zinc finger phorbol-ester/DAG-type profile. | 133 | 183 | 15.518 |
| 35 | g12752.t1 | ProSiteProfiles | PS50081 | Zinc finger phorbol-ester/DAG-type profile. | 205 | 237 | 10.154 |
| 19 | g12752.t1 | SMART | SM00109 | c1_12 | 134 | 183 | 2.2E-13 |
| 18 | g12752.t1 | SMART | SM00109 | c1_12 | 206 | 242 | 0.11 |
| 10 | g12752.t1 | SUPERFAMILY | SSF57889 | Cysteine-rich domain | 120 | 185 | 1.45E-18 |
| 9 | g12752.t1 | SUPERFAMILY | SSF57889 | Cysteine-rich domain | 192 | 237 | 1.79E-11 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0035556 | intracellular signal transduction | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed