General information for g12763.t8
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Phosphatidylinositide phosphatase SAC1.
Parent gene
- The parent gene g12763 is located on chr_1: 25840333..25841930 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g12763 | g12763.t8 | isoform | g12763.t8 | 25839120 | 25839600 |
| chr_1 | g12763 | g12763.t8 | exon | g12763.t8.exon1 | 25839120 | 25839600 |
| chr_1 | g12763 | g12763.t8 | cds | g12763.t8.CDS1 | 25839122 | 25839553 |
| chr_1 | g12763 | g12763.t8 | TSS | g12763.t8 | 25840439 | 25840439 |
| chr_1 | g12763 | g12763.t8 | TTS | g12763.t8 | NA | NA |
Sequences
>g12763.t8 Gene=g12763 Length=481
GATTCGTTTGGAATAGAAACTTGTTGAAACCTTTTCAAAGACCAGAGATGCGTCGTTACT
GTCTTCCTCTACTATTAGGATTTATATCAATTAATCAAGTGAGCATCAATGGTCATGTCT
TTTCATGGATTTTAATTTCACGACGTTCAACTAGACGTGCTGGTACTCGTCTTTTCTGTC
GTGGGATTGATAATGATGGAAATGTCTCAAATTTTGTTGAGACTGAGCAAATTGTTGAAT
ACAATAGTGAAAAAGTGTCCTTTGTACAAATTCGCGGAAGTATACCGATGTTTTGGTATC
AAACCCCAAATCTTCGTCTTAAGCCACGTCCAAAAATCGATAAAACTCGTGATAGCTTAC
CGCCATATCAAATTCACATGGATGAATTAGTGATGCACTATGGAAAAATTGTTCTTGTCA
ATTTAATTGATCATCGTGGTGCTGAAGATGAGCTAGAAAAAGCATTTGCTCAACTTGTAA
G
>g12763.t8 Gene=g12763 Length=144
MRRYCLPLLLGFISINQVSINGHVFSWILISRRSTRRAGTRLFCRGIDNDGNVSNFVETE
QIVEYNSEKVSFVQIRGSIPMFWYQTPNLRLKPRPKIDKTRDSLPPYQIHMDELVMHYGK
IVLVNLIDHRGAEDELEKAFAQLV
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g12763.t8 | PANTHER | PTHR45662 | PHOSPHATIDYLINOSITIDE PHOSPHATASE SAC1 | 2 | 144 | 1.6E-51 |
| 1 | g12763.t8 | Pfam | PF02383 | SacI homology domain | 2 | 144 | 5.0E-51 |
| 5 | g12763.t8 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 22 | - |
| 6 | g12763.t8 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 4 | - |
| 7 | g12763.t8 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 5 | 15 | - |
| 8 | g12763.t8 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 16 | 22 | - |
| 4 | g12763.t8 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 23 | 144 | - |
| 3 | g12763.t8 | ProSiteProfiles | PS50275 | Sac phosphatase domain profile. | 1 | 144 | 39.678 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0042578 | phosphoric ester hydrolase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
