General information for g12798.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative fatty acyl-CoA reductase CG5065.
Parent gene
- The parent gene g12798 is located on chr_1: 26246247..26248215 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g12798 | g12798.t1 | isoform | g12798.t1 | 26246247 | 26248215 |
| chr_1 | g12798 | g12798.t1 | exon | g12798.t1.exon1 | 26246247 | 26246427 |
| chr_1 | g12798 | g12798.t1 | cds | g12798.t1.CDS1 | 26246247 | 26246427 |
| chr_1 | g12798 | g12798.t1 | exon | g12798.t1.exon2 | 26246487 | 26246747 |
| chr_1 | g12798 | g12798.t1 | cds | g12798.t1.CDS2 | 26246487 | 26246747 |
| chr_1 | g12798 | g12798.t1 | exon | g12798.t1.exon3 | 26246812 | 26247048 |
| chr_1 | g12798 | g12798.t1 | cds | g12798.t1.CDS3 | 26246812 | 26247048 |
| chr_1 | g12798 | g12798.t1 | exon | g12798.t1.exon4 | 26247120 | 26247255 |
| chr_1 | g12798 | g12798.t1 | cds | g12798.t1.CDS4 | 26247120 | 26247255 |
| chr_1 | g12798 | g12798.t1 | exon | g12798.t1.exon5 | 26247320 | 26247330 |
| chr_1 | g12798 | g12798.t1 | cds | g12798.t1.CDS5 | 26247320 | 26247330 |
| chr_1 | g12798 | g12798.t1 | exon | g12798.t1.exon6 | 26247402 | 26247961 |
| chr_1 | g12798 | g12798.t1 | cds | g12798.t1.CDS6 | 26247402 | 26247961 |
| chr_1 | g12798 | g12798.t1 | exon | g12798.t1.exon7 | 26248021 | 26248215 |
| chr_1 | g12798 | g12798.t1 | cds | g12798.t1.CDS7 | 26248021 | 26248215 |
| chr_1 | g12798 | g12798.t1 | TSS | g12798.t1 | NA | NA |
| chr_1 | g12798 | g12798.t1 | TTS | g12798.t1 | NA | NA |
Sequences
>g12798.t1 Gene=g12798 Length=1581
ATGAAGTTGAATTCAGTGCAAGAATTTTACAAAGACAAAACAATTTTTATAACAGGTGGC
TCAGGATTCATGGGCAAAGTATTGATAGAAAAGCTTCTTTATTCATGTTCAGATGTTAAA
GAACTCATCATATTGATGAGACCTAAAAAAGGCAAAACCGCACAACAACGTGTTGATGAT
TTTGCAAAATTGCCTATGTTCAAACGACTGCTCGATGAAAAGCCAGAAATGATGTTAAAA
ATTTTCCCAGTTTGGGGTGAAATTACTCAGCAAAATCTAGGATTAAGTGAAGAACATTTG
GAACGAGTGATTCAGAAGTCTCAAATTGTCTTCCATTTTGCTGCTTCATTAAAACTTGAA
GCGACTTTGCGACACAATGTGCTAATGAATTTAACTGGCACACAAAACGTGATGAAAATT
GCCAAGCAGATGAAAAATCTTGTTCAAATGGTTCATTTGTCAACAGCATTCTGTTGTGAA
GATATTGAAATACTTGAGGAAAGAGTTTATGACCATCCACATAGTCCACATGATTTAATT
CGTTGTGCTGAATGGATGAGTGATGAAGCAATGGCAGCAATACAGAATGATATCTTGGGA
AGTCAACCAAATACTTATACTTATACAAAAAGACTTTCAGAAATTCTTGTACGTGAACAA
TATGACAGTGAAAAATTTCCAATTATTATCGTTAGACCAAGCATTGTTTCACCTGCTTTT
CGCGAACCATTGCCAGGCTGGGTTGATAGTCTTAATGGACCACCAGGAATTTTTTATGCA
GCTGGCATGGGCGTCTTGAGGTCTATGTTAATTGATCCTGAAGGAATGATCGAAGGAATC
CCTGTTGATGCTTGCATAAATGGAATTTTAACTCTGACAAAACATGTTGCAACAGAGAAA
AGATCAAAAGAAATTCCAGTTTTCAATGCAACAATTCATGAATCTCGTCGAATTAGTAAT
GGTAGAATGTTCAAATACGCAAAAGAATTGGGTAATATGTATCCAGTGACGGGATTATGG
TATCCAGACGGTTCCATTACAGAAAGTGTTTACATTCATAAACTCAAGACATTCTTCTTT
CAATGGATTCCCGCATATTTCATTGATTTTTTACTACTTTGTTTTGGACAAAAACGATTC
ATGGTTTATGTGCAAAAAAGAATCCAAATTGGTCTACAAGTGCTTCAATTTTTCACAATG
CATAAATGGAATTTTAAATCAGAGAATTTTAATGGACTGACAGCATTGCAGACACCAGAT
GAAGCTGAAATGTTTCTTTTTGACTCACGTAATACGGGAGATGAGAAGGAATATTTAAAA
AATTCTCTACTTGGTGCGAGACAATATTGTGTCAAAGATCCGCTCTCAACATTACCTAGA
GCAAGATTAATTCTTAAAATACAATATGTCGTTCACATTTTCTGCAAGTTTATGTTTTGG
TACTTTGTGATTAGCTTTCTTTTAAGAGCAACCGGATTAATGGAACCAGTTCATGAATTC
ATTACTTCATTGAAGCAATCGGTTCATGGTTACAATTCTTCATCATCTATTGTTGGTCTT
GTTGGATTAAATACATTGTGA
>g12798.t1 Gene=g12798 Length=526
MKLNSVQEFYKDKTIFITGGSGFMGKVLIEKLLYSCSDVKELIILMRPKKGKTAQQRVDD
FAKLPMFKRLLDEKPEMMLKIFPVWGEITQQNLGLSEEHLERVIQKSQIVFHFAASLKLE
ATLRHNVLMNLTGTQNVMKIAKQMKNLVQMVHLSTAFCCEDIEILEERVYDHPHSPHDLI
RCAEWMSDEAMAAIQNDILGSQPNTYTYTKRLSEILVREQYDSEKFPIIIVRPSIVSPAF
REPLPGWVDSLNGPPGIFYAAGMGVLRSMLIDPEGMIEGIPVDACINGILTLTKHVATEK
RSKEIPVFNATIHESRRISNGRMFKYAKELGNMYPVTGLWYPDGSITESVYIHKLKTFFF
QWIPAYFIDFLLLCFGQKRFMVYVQKRIQIGLQVLQFFTMHKWNFKSENFNGLTALQTPD
EAEMFLFDSRNTGDEKEYLKNSLLGARQYCVKDPLSTLPRARLILKIQYVVHIFCKFMFW
YFVISFLLRATGLMEPVHEFITSLKQSVHGYNSSSSIVGLVGLNTL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 14 | g12798.t1 | CDD | cd05236 | FAR-N_SDR_e | 13 | 335 | 1.556E-106 |
| 15 | g12798.t1 | CDD | cd09071 | FAR_C | 359 | 450 | 2.46399E-25 |
| 8 | g12798.t1 | Gene3D | G3DSA:3.40.50.720 | - | 3 | 342 | 7.9E-63 |
| 3 | g12798.t1 | PANTHER | PTHR11011 | MALE STERILITY PROTEIN 2-RELATED | 2 | 491 | 3.5E-190 |
| 4 | g12798.t1 | PANTHER | PTHR11011:SF12 | FATTY ACYL-COA REDUCTASE | 2 | 491 | 3.5E-190 |
| 1 | g12798.t1 | Pfam | PF07993 | Male sterility protein | 17 | 288 | 1.3E-65 |
| 2 | g12798.t1 | Pfam | PF03015 | Male sterility protein | 360 | 453 | 1.3E-23 |
| 11 | g12798.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 357 | - |
| 13 | g12798.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 358 | 376 | - |
| 9 | g12798.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 377 | 468 | - |
| 12 | g12798.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 469 | 488 | - |
| 10 | g12798.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 489 | 526 | - |
| 7 | g12798.t1 | SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 4 | 298 | 2.22E-26 |
| 6 | g12798.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 358 | 376 | - |
| 5 | g12798.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 470 | 492 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0080019 | fatty-acyl-CoA reductase (alcohol-forming) activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed