General information for g12799.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative fatty acyl-CoA reductase CG5065.
Parent gene
- The parent gene g12799 is located on chr_1: 26251645..26253789 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g12799 | g12799.t1 | isoform | g12799.t1 | 26251645 | 26253789 |
| chr_1 | g12799 | g12799.t1 | exon | g12799.t1.exon1 | 26251645 | 26251804 |
| chr_1 | g12799 | g12799.t1 | cds | g12799.t1.CDS1 | 26251645 | 26251804 |
| chr_1 | g12799 | g12799.t1 | exon | g12799.t1.exon2 | 26251864 | 26251992 |
| chr_1 | g12799 | g12799.t1 | cds | g12799.t1.CDS2 | 26251864 | 26251992 |
| chr_1 | g12799 | g12799.t1 | exon | g12799.t1.exon3 | 26252194 | 26252325 |
| chr_1 | g12799 | g12799.t1 | cds | g12799.t1.CDS3 | 26252194 | 26252325 |
| chr_1 | g12799 | g12799.t1 | exon | g12799.t1.exon4 | 26252458 | 26252655 |
| chr_1 | g12799 | g12799.t1 | cds | g12799.t1.CDS4 | 26252458 | 26252655 |
| chr_1 | g12799 | g12799.t1 | exon | g12799.t1.exon5 | 26252717 | 26252758 |
| chr_1 | g12799 | g12799.t1 | cds | g12799.t1.CDS5 | 26252717 | 26252758 |
| chr_1 | g12799 | g12799.t1 | exon | g12799.t1.exon6 | 26252828 | 26253534 |
| chr_1 | g12799 | g12799.t1 | cds | g12799.t1.CDS6 | 26252828 | 26253534 |
| chr_1 | g12799 | g12799.t1 | exon | g12799.t1.exon7 | 26253592 | 26253789 |
| chr_1 | g12799 | g12799.t1 | cds | g12799.t1.CDS7 | 26253592 | 26253789 |
| chr_1 | g12799 | g12799.t1 | TSS | g12799.t1 | 26253834 | 26253834 |
| chr_1 | g12799 | g12799.t1 | TTS | g12799.t1 | NA | NA |
Sequences
>g12799.t1 Gene=g12799 Length=1566
ATGTCAGAGCTAAATTCAGTACAAAAATTCTATAAAGATAAAACTGTGCTTATAACAGGC
GCCAGTGGTTTTATGGGCAAAATTCTTGTGGAAAAATTGCTTTATTCATGTTCGGAAGTG
AAAGAATTAATTCTCTTGATGCGTGCCAAACGCGGAAAACCACCTAGTGAAAGAATTGAA
GGCTACAACAAATTGCCAATGTTCAAAAGATTAGTTGAAGAGAAGCCAGAAATGTTTAAA
AAGCTTACAGTTGTTTCGGGTGAAATTTCTGAGCCAAATTTAGATCTGAGTGAAGAGGAT
CTTAAATATGTCACAGAAAGAACTCAAATCATTTTTCATCTCGCTGCATCACTCAAACTT
GAAGCAACACTCAAGCCTAATATAATTCTCAATTTAACTGCTACAAAATATGTCATGAAT
GTTGCAAAAATGATGAAAAATCTCATCATTATGGTTCATACTTCAACTGCATTTTGCAAT
ATTGATCAAAAAATTGTTGGTGAGGAAGTTTATAAATTTCCACATAAACCAGAAGATTTA
ATGAGATGTGCTGAATGGATGACAGAAGAAGCTATGGCAAAAATGCAGAAAGAAATTTTA
CTTTTTCAACCCAACACATACACATATACCAAAAGATTAGCAGAAATTTTAGTTCAACAA
GAATATGAGAAAGGATTGAATGTTTGCATTGTAAGGCCAAGTATAGTCACACCGACGTTT
TGGGAGCCAATTATGGGATGGGTTGATTCAATGAACGGACCTCCTGGCATTGGTGTTGCT
ATTGGAAAAGGTGCATTGAGAACAATGCTTGTCGATCCAAAAGCATCAGTTGAAGCTGTT
CCATGCGATATGGCCGTCAATGGATTAATCATGTTCGCAAAGAAACTCGGAACTACAACA
GAAAGATTCAAAAAAATTCAAGTTTGTAACATAACAGCTCATGAGAGCTCGAAGGTTACA
AATGGCTATGTCTATGAGGAAGGTAAAAAACATCGATGGACAGTGCCTTTTTCGCAAATG
CTATGGTTTCCAAATTGTGCAATTACACAGAATAAATTATACTATGTAATTAATGTCTTT
TTGTTTCAATGGATCCCTGCATATCTCGTTGATTTTCTGATGTGGATTTTTCGTCAACCT
CGATTCATGGTTAAAGTTCAACGTAAAATTGCAACGGGCATGGATGTATTGAAATTTGTC
ACAACTAACGATTGGAATTTTAAATCAGACAATTATTTTAGTCTAGTTCAAATACAAGAT
AGAGAGGAATGGGAAATGTTTCTCGTAGATGGCAGAAATGTAGGAAATAATGACAAATAC
ATGTTAGATTCTGCTCTTGGAGTTAGAAGATTTTTATGTCGTGATTCTTTGAAAACTCTC
CCAAGAGCAAGAATGATGATGTTCATACTTTTCATACTCGATACATTCTGTAAATTGGTT
TTCTTCTATTGGATTGGAAAGAAAATTCTTGTGAACACGGGTTTAATGGAATTGTTGAAT
ACTCACACTCAAGAGCTTTTTGCTAAACAAAACTTCAGCAACGGACAACTCATTTTTCCT
TCTTAA
>g12799.t1 Gene=g12799 Length=521
MSELNSVQKFYKDKTVLITGASGFMGKILVEKLLYSCSEVKELILLMRAKRGKPPSERIE
GYNKLPMFKRLVEEKPEMFKKLTVVSGEISEPNLDLSEEDLKYVTERTQIIFHLAASLKL
EATLKPNIILNLTATKYVMNVAKMMKNLIIMVHTSTAFCNIDQKIVGEEVYKFPHKPEDL
MRCAEWMTEEAMAKMQKEILLFQPNTYTYTKRLAEILVQQEYEKGLNVCIVRPSIVTPTF
WEPIMGWVDSMNGPPGIGVAIGKGALRTMLVDPKASVEAVPCDMAVNGLIMFAKKLGTTT
ERFKKIQVCNITAHESSKVTNGYVYEEGKKHRWTVPFSQMLWFPNCAITQNKLYYVINVF
LFQWIPAYLVDFLMWIFRQPRFMVKVQRKIATGMDVLKFVTTNDWNFKSDNYFSLVQIQD
REEWEMFLVDGRNVGNNDKYMLDSALGVRRFLCRDSLKTLPRARMMMFILFILDTFCKLV
FFYWIGKKILVNTGLMELLNTHTQELFAKQNFSNGQLIFPS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 14 | g12799.t1 | CDD | cd05236 | FAR-N_SDR_e | 14 | 331 | 1.08866E-102 |
| 15 | g12799.t1 | CDD | cd09071 | FAR_C | 361 | 452 | 6.749E-22 |
| 8 | g12799.t1 | Gene3D | G3DSA:3.40.50.720 | - | 3 | 344 | 2.9E-56 |
| 3 | g12799.t1 | PANTHER | PTHR11011 | MALE STERILITY PROTEIN 2-RELATED | 3 | 483 | 1.7E-172 |
| 4 | g12799.t1 | PANTHER | PTHR11011:SF12 | FATTY ACYL-COA REDUCTASE | 3 | 483 | 1.7E-172 |
| 1 | g12799.t1 | Pfam | PF07993 | Male sterility protein | 18 | 287 | 7.1E-63 |
| 2 | g12799.t1 | Pfam | PF03015 | Male sterility protein | 362 | 454 | 1.4E-17 |
| 11 | g12799.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 352 | - |
| 12 | g12799.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 353 | 377 | - |
| 9 | g12799.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 378 | 465 | - |
| 13 | g12799.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 466 | 486 | - |
| 10 | g12799.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 487 | 521 | - |
| 7 | g12799.t1 | SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 7 | 281 | 3.28E-25 |
| 5 | g12799.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 355 | 377 | - |
| 6 | g12799.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 467 | 486 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0080019 | fatty-acyl-CoA reductase (alcohol-forming) activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed