General information for g12832.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Amidophosphoribosyltransferase.
Parent gene
- The parent gene g12832 is located on chr_1: 26467765..26468609 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g12832 | g12832.t1 | TTS | g12832.t1 | 26467603 | 26467603 |
| chr_1 | g12832 | g12832.t1 | isoform | g12832.t1 | 26467765 | 26468609 |
| chr_1 | g12832 | g12832.t1 | exon | g12832.t1.exon1 | 26467765 | 26468197 |
| chr_1 | g12832 | g12832.t1 | cds | g12832.t1.CDS1 | 26467765 | 26468197 |
| chr_1 | g12832 | g12832.t1 | exon | g12832.t1.exon2 | 26468254 | 26468609 |
| chr_1 | g12832 | g12832.t1 | cds | g12832.t1.CDS2 | 26468254 | 26468609 |
| chr_1 | g12832 | g12832.t1 | TSS | g12832.t1 | NA | NA |
Sequences
>g12832.t1 Gene=g12832 Length=789
ATGTCGATGGATACATTTCAAGGTGATTTCTCTCTAAGCGCGCTTGTTGAAATTGTTGAA
ATATCACGAGAAGGAATAAAAACGATTGACATTGTTGAGAGACCTGATGGTTACGATCGT
CAAGCATTCTGTATTTTTGAATATGTTTATTTTGCGCGATCAGATTCAATTTTCGAAGGT
CAAATGGTTTACACTGTTCGTCTGGAATGTGGACGACAATTAGCAAGAGAAGCATTTATT
GATGCTGATATTGTGAGTTCAGTCCCTGAATCTGGAACAGCTGCAGCTCATGGTTATTCT
CGTGAATCGAAAATTACATTTGCAGAAGTTCTGTGCAAGAATCGTTATGTCGGAAGAACA
TTCATTCAACCATCAACTCGATTGCGGCAACTTGGTGTTGCAAAGAAATTTGGTGCGCTT
TCAGAAAATGTTGCAGGCAAACGTTTGATTCTTATTGATGACTCTATTGTTCGTGGAAAT
ACAATTGGACCAATTATTAAATTATTAAGAGATGCAGGAGCTAAAGAAGTTCATATCAGA
GTAGCATCACCACCTCTTCTTTATCCATGCTATATGGGCATAAATATTCCAACACGAGAA
GAATTGATTGGAAATAAATTAAATCCAAATGAACTCGCCAAACAAATAAATGCTGATAGT
TTAGCTTATTTGTCAGTTGATGGATTGAAAAAAGCTGTTAGAACTAATCTGAAAACGAAA
AGCCCAGGAAAAATTGGACATTGCACTGCATGTTTAACAGGCGATTATCCTATTGAATTA
GATTGGTAG
>g12832.t1 Gene=g12832 Length=262
MSMDTFQGDFSLSALVEIVEISREGIKTIDIVERPDGYDRQAFCIFEYVYFARSDSIFEG
QMVYTVRLECGRQLAREAFIDADIVSSVPESGTAAAHGYSRESKITFAEVLCKNRYVGRT
FIQPSTRLRQLGVAKKFGALSENVAGKRLILIDDSIVRGNTIGPIIKLLRDAGAKEVHIR
VASPPLLYPCYMGINIPTREELIGNKLNPNELAKQINADSLAYLSVDGLKKAVRTNLKTK
SPGKIGHCTACLTGDYPIELDW
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g12832.t1 | CDD | cd06223 | PRTases_typeI | 70 | 206 | 0e+00 |
| 7 | g12832.t1 | Gene3D | G3DSA:3.40.50.2020 | - | 69 | 232 | 0e+00 |
| 3 | g12832.t1 | PANTHER | PTHR11907:SF20 | AMIDOPHOSPHORIBOSYLTRANSFERASE | 17 | 239 | 0e+00 |
| 5 | g12832.t1 | PANTHER | PTHR11907 | AMIDOPHOSPHORIBOSYLTRANSFERASE | 17 | 239 | 0e+00 |
| 2 | g12832.t1 | PANTHER | PTHR11907:SF20 | AMIDOPHOSPHORIBOSYLTRANSFERASE | 241 | 262 | 0e+00 |
| 4 | g12832.t1 | PANTHER | PTHR11907 | AMIDOPHOSPHORIBOSYLTRANSFERASE | 241 | 262 | 0e+00 |
| 1 | g12832.t1 | Pfam | PF00156 | Phosphoribosyl transferase domain | 73 | 181 | 5e-07 |
| 6 | g12832.t1 | SUPERFAMILY | SSF53271 | PRTase-like | 43 | 259 | 0e+00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0009116 | nucleoside metabolic process | BP |
KEGG
Orthology
- This transcript has been annotated with K00764 (amidophosphoribosyltransferase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
