Gene loci information

Transcript annotation

  • This transcript has been annotated as Methyl farnesoate epoxidase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g12867 g12867.t1 TSS g12867.t1 26638349 26638349
chr_1 g12867 g12867.t1 isoform g12867.t1 26638434 26640393
chr_1 g12867 g12867.t1 exon g12867.t1.exon1 26638434 26638494
chr_1 g12867 g12867.t1 cds g12867.t1.CDS1 26638434 26638494
chr_1 g12867 g12867.t1 exon g12867.t1.exon2 26638544 26639755
chr_1 g12867 g12867.t1 cds g12867.t1.CDS2 26638544 26639755
chr_1 g12867 g12867.t1 exon g12867.t1.exon3 26640212 26640393
chr_1 g12867 g12867.t1 cds g12867.t1.CDS3 26640212 26640393
chr_1 g12867 g12867.t1 TTS g12867.t1 NA NA

Sequences

>g12867.t1 Gene=g12867 Length=1455
ATGTTGTTAATTATTGCCTGCTATTGTCTTTTGACAAGAAAACCAAATCAATTTCCACCA
GGTCCAAAATTTTTACCAATTGTCGGTAACATCAATATTCTCAGGCATATCAAAGTACTT
AAATTTCATCATCTTTTATGGCATCACATTTCAAAACTCTATGGACCAGTCGTTGGCCTT
AAGTTCTTTCACAAATACGTGGTAATTGTGTCGAGCAAAGAGGCAATTAGAGAAGTTTAT
TCACGCGATGAACTCAACGGTCGACCGGATGGTTTTTTCTTTCGTGTAAGAACATTTGAG
CGACGACTTGGTGTAGTTTTTACTGATGGTCATTATTGGGAGAATCAAAGAAGATTTTCA
GCAACAACTTTAAAACATTTAGGTGTTGGAAAATTCAGTATGGCAAAACATATTGAAAAT
GAAGCTGAAGAATTGATTAAAGAATTTTTCAATAAAGCTGAAAATAATGAAAGTTTTTAT
ATGCACAGTGCTTTTGATATTTCTGTGCTTAATCTTATGTGGGTGCTACTGAAAGGTGAA
AGATTTAAATTATCTGACCAACGATTAATTGACCTTGTTGCTGCAGTTCATAAAAACTTT
CAAGTTCTTGACATGTCTGGTGGAATTTTAAATTTATTTCCATTTATTCGATATATTATA
CCTGAATTGAGTGGCTATAAAGAACTTGTTGACACAATGAGACCAATTTGGGATTTTTTA
CAACAAGAAATCGAGAAAATTGAAGAAAATTTCAATCCACAAACTGAACCAAAATGTTTT
ATTGAAGCATATTTGAAAGAAATTCAAAATCATAAAGGAGTTGAAAGTTATTTTACTTAT
GAACAACTTCATGGCATTTGTATTGATTTCATTCAAGCTGGTTCAGAAACGACAGCAAAT
TCACTTGGATTTGCAATTCTTTACATGTTACATCATCCGAAAATTATGAAGAAAGTGCAA
GTTGAATTAATGTCAATTGTTGGTGTCAATACGCTACCAAAATTGAGTGACAGACCAAAA
TTAAAATACACTGATGCTGTAATAAGTGAAGTTCAACGATGTGCCAATATTGCACCACTT
GGAATCGCTCATCGTGCTGTAACTGATGCAAAACTTGATGGATTTTTAATACCGAAAGAT
TCAACAATTTTATGCAATCTTTATAGTCTAAATATGGATGAGAAAAATTGGAAAAATCCG
ACAGAATTTATGCCAGAAAGATTTTTAAATGATGATGGAGATTTGGTTTATCCGGACTAT
TTTATTCCTTTTGGAATGGGAAAAAGACGTTGCATAGGAGAAAATGTCGCCAAATCGAGT
CTATTTCTATTTTTTGCTTCAACAATGCACACTTTTACACCATATTGTATTGGAGAATTA
CCAAGTTTAACGGGCATTGACGGAATTTCTCTCGCTCCAAAACCTTTCAAAGTTCTTTTG
CGACGAAGATTTTAA

>g12867.t1 Gene=g12867 Length=484
MLLIIACYCLLTRKPNQFPPGPKFLPIVGNINILRHIKVLKFHHLLWHHISKLYGPVVGL
KFFHKYVVIVSSKEAIREVYSRDELNGRPDGFFFRVRTFERRLGVVFTDGHYWENQRRFS
ATTLKHLGVGKFSMAKHIENEAEELIKEFFNKAENNESFYMHSAFDISVLNLMWVLLKGE
RFKLSDQRLIDLVAAVHKNFQVLDMSGGILNLFPFIRYIIPELSGYKELVDTMRPIWDFL
QQEIEKIEENFNPQTEPKCFIEAYLKEIQNHKGVESYFTYEQLHGICIDFIQAGSETTAN
SLGFAILYMLHHPKIMKKVQVELMSIVGVNTLPKLSDRPKLKYTDAVISEVQRCANIAPL
GIAHRAVTDAKLDGFLIPKDSTILCNLYSLNMDEKNWKNPTEFMPERFLNDDGDLVYPDY
FIPFGMGKRRCIGENVAKSSLFLFFASTMHTFTPYCIGELPSLTGIDGISLAPKPFKVLL
RRRF

Protein features from InterProScan

Transcript Database ID Name Start End E.value
18 g12867.t1 Gene3D G3DSA:1.10.630.10 Cytochrome p450 11 484 5.8E-128
2 g12867.t1 PANTHER PTHR24303:SF13 CYTOCHROME P450 305A1-RELATED 3 483 8.7E-151
3 g12867.t1 PANTHER PTHR24303 HEME-BINDING MONOOXYGENASE FAMILY 3 483 8.7E-151
11 g12867.t1 PRINTS PR00463 E-class P450 group I signature 51 70 2.5E-47
5 g12867.t1 PRINTS PR00463 E-class P450 group I signature 168 186 2.5E-47
8 g12867.t1 PRINTS PR00463 E-class P450 group I signature 282 299 2.5E-47
12 g12867.t1 PRINTS PR00385 P450 superfamily signature 293 310 2.1E-12
6 g12867.t1 PRINTS PR00463 E-class P450 group I signature 302 328 2.5E-47
9 g12867.t1 PRINTS PR00463 E-class P450 group I signature 345 363 2.5E-47
13 g12867.t1 PRINTS PR00385 P450 superfamily signature 346 357 2.1E-12
4 g12867.t1 PRINTS PR00463 E-class P450 group I signature 386 410 2.5E-47
7 g12867.t1 PRINTS PR00463 E-class P450 group I signature 421 431 2.5E-47
15 g12867.t1 PRINTS PR00385 P450 superfamily signature 422 431 2.1E-12
10 g12867.t1 PRINTS PR00463 E-class P450 group I signature 431 454 2.5E-47
14 g12867.t1 PRINTS PR00385 P450 superfamily signature 431 442 2.1E-12
1 g12867.t1 Pfam PF00067 Cytochrome P450 19 479 6.0E-97
17 g12867.t1 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 424 433 -
16 g12867.t1 SUPERFAMILY SSF48264 Cytochrome P450 19 483 4.85E-110

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

## Warning: Removed 1 row(s) containing missing values (geom_path).

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0020037 heme binding MF
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen MF
GO:0005506 iron ion binding MF
GO:0055114 NA NA

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed