Gene loci information

Transcript annotation

  • This transcript has been annotated as Inactive selenide, water dikinase-like protein.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g12886 g12886.t1 TTS g12886.t1 26723225 26723225
chr_1 g12886 g12886.t1 isoform g12886.t1 26723879 26725121
chr_1 g12886 g12886.t1 exon g12886.t1.exon1 26723879 26724562
chr_1 g12886 g12886.t1 cds g12886.t1.CDS1 26723879 26724562
chr_1 g12886 g12886.t1 exon g12886.t1.exon2 26724624 26725121
chr_1 g12886 g12886.t1 cds g12886.t1.CDS2 26724624 26725121
chr_1 g12886 g12886.t1 TSS g12886.t1 26725483 26725483

Sequences

>g12886.t1 Gene=g12886 Length=1182
ATGGGTGATTATGCTAACCATTCCTTGGGAATCAAAATAGAGATGGGAAGCGATTTGCTG
AGACGACAATTTGATCCAACTGCCCACGATTTAGATGCAAATTTTCGACTAACGCGCTTT
GCTGATTTGAAAGGTCGCGGTTGCAAAGTTCCACAAGATGTGCTCAACAAACTCGTTGGT
TCACTGCAACAAGACTATACCTCTCATGATGATCAATACATGCATATGGCTGTTCCTCGA
ATTGGCATCGGACTCGATTGCTCTGTCACGCCGCTAAGACATGGTGGCTTATGCTTAGTA
CAAACAACTGATTTCTTTTATCCAATTGTTGACGATCCTTATATGATGGGTAAAATTGCT
TGTGCTAATGTCTTGAGCGATCTCTACGCAATGGGTGTCATTGAATGTGACAATATGCTT
ATGCTTTTGGCCGTCAGTACAAAAATGACCGAAAAAGAGCGCGATGTTGTAATTCCTTTA
ATCATGAGAGGTTTTAAGGATTCAGCACTTGAAGCTGGAACGAGTGTCACAGGAGGACAG
AGTGTTGTTAACCCATGGTGTACAATCGGAGGTATTGCATCAACAATTTGTAATCCAAAC
GATTATATTGTTCCTGATAATGCAGTAGTTGGTGATGTTTTGGTTTTAACAAAGCCACTC
GGAACACAAGTTGCTGTAAATGCTCATCAATGGCTCGAACAACCAGAACGTTGGAATCGT
ATTAAACTTGTCGTATCAGAAGAAGATGTTCGCAAAGCCTATCATCGTGCAATGGATTCA
ATGGCTCGCTTAAATCGCACTGCATCACGCTTAATGCATAAATATAATGCGCATGGCGCA
ACTGATGTCACTGGATTCGGTCTTCTTGGTCATGCTCAAACTTTAGCTTCTCATCAAAAG
AATGAGGTTTCATTTGTTATTCACAACTTGCCAGTTATCGCAAAAATGGCCGCAGTCGCA
AAAGCATGTGGAAATATGTTTCAACTGCTTCAAGGCCATTCCGCAGAAACGTCTGGCGGT
CTTTTAATCTGCCTACCACGTGAACAAGCTGCTGCTTACTGTAAAGATATTGAAAAACAA
GAAGGATATCAAGCATGGATTATTGGTATTGTCGAGAAAGGTAATCGATCAGCACGTATC
ATCGACAAACCACGTGTAATTGAAGTTCCTGCCAAGGAGTAA

>g12886.t1 Gene=g12886 Length=393
MGDYANHSLGIKIEMGSDLLRRQFDPTAHDLDANFRLTRFADLKGRGCKVPQDVLNKLVG
SLQQDYTSHDDQYMHMAVPRIGIGLDCSVTPLRHGGLCLVQTTDFFYPIVDDPYMMGKIA
CANVLSDLYAMGVIECDNMLMLLAVSTKMTEKERDVVIPLIMRGFKDSALEAGTSVTGGQ
SVVNPWCTIGGIASTICNPNDYIVPDNAVVGDVLVLTKPLGTQVAVNAHQWLEQPERWNR
IKLVVSEEDVRKAYHRAMDSMARLNRTASRLMHKYNAHGATDVTGFGLLGHAQTLASHQK
NEVSFVIHNLPVIAKMAAVAKACGNMFQLLQGHSAETSGGLLICLPREQAAAYCKDIEKQ
EGYQAWIIGIVEKGNRSARIIDKPRVIEVPAKE

Protein features from InterProScan

Transcript Database ID Name Start End E.value
11 g12886.t1 CDD cd02195 SelD 37 371 0
7 g12886.t1 Gene3D G3DSA:3.90.650.10 - 47 388 0
8 g12886.t1 Gene3D G3DSA:3.30.1330.10 - 87 202 0
3 g12886.t1 PANTHER PTHR10256 SELENIDE, WATER DIKINASE 21 390 0
4 g12886.t1 PANTHER PTHR10256:SF2 SELENIDE, WATER DIKINASE 1 21 390 0
10 g12886.t1 PIRSF PIRSF036407 SelenoP_synth 29 384 0
2 g12886.t1 Pfam PF00586 AIR synthase related protein, N-terminal domain 86 189 0
1 g12886.t1 Pfam PF02769 AIR synthase related protein, C-terminal domain 210 381 0
6 g12886.t1 SUPERFAMILY SSF55326 PurM N-terminal domain-like 37 200 0
5 g12886.t1 SUPERFAMILY SSF56042 PurM C-terminal domain-like 204 376 0
9 g12886.t1 TIGRFAM TIGR00476 selD: selenide, water dikinase 36 354 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005524 ATP binding MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values