General information for g12886.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Inactive selenide, water dikinase-like protein.
Parent gene
- The parent gene g12886 is located on chr_1: 26723879..26725121 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g12886 | g12886.t2 | TTS | g12886.t2 | 26723225 | 26723225 |
| chr_1 | g12886 | g12886.t2 | isoform | g12886.t2 | 26723879 | 26725121 |
| chr_1 | g12886 | g12886.t2 | exon | g12886.t2.exon1 | 26723879 | 26724586 |
| chr_1 | g12886 | g12886.t2 | cds | g12886.t2.CDS1 | 26723879 | 26724289 |
| chr_1 | g12886 | g12886.t2 | exon | g12886.t2.exon2 | 26724654 | 26725121 |
| chr_1 | g12886 | g12886.t2 | TSS | g12886.t2 | 26725483 | 26725483 |
Sequences
>g12886.t2 Gene=g12886 Length=1176
ATGGGTGATTATGCTAACCATTCCTTGGGAATCAAAATAGAGATGGGAAGCGATTTGCTG
AGACGACAATTTGATCCAACTGCCCACGATTTAGATGCAAATTTTCGACTAACGCGCTTT
GCTGATTTGAAAGGTCGCGGTTGCAAAGTTCCACAAGATGTGCTCAACAAACTCGTTGGT
TCACTGCAACAAGACTATACCTCTCATGATGATCAATACATGCATATGGCTGTTCCTCGA
ATTGGCATCGGACTCGATTGCTCTGTCACGCCGCTAAGACATGGTGGCTTATGCTTAGTA
CAAACAACTGATTTCTTTTATCCAATTGTTGACGATCCTTATATGATGGGTAAAATTGCT
TGTGCTAATGTCTTGAGCGATCTCTACGCAATGGGTGTCATTGAATGTGACAATATGCTT
ATGCTTTTGGCCGTCAGTACAAAAATGACCGAAAAAGAGCGCGATGTTTCTAACGTCATT
ATTTAATTTTAGGATTCAGCACTTGAAGCTGGAACGAGTGTCACAGGAGGACAGAGTGTT
GTTAACCCATGGTGTACAATCGGAGGTATTGCATCAACAATTTGTAATCCAAACGATTAT
ATTGTTCCTGATAATGCAGTAGTTGGTGATGTTTTGGTTTTAACAAAGCCACTCGGAACA
CAAGTTGCTGTAAATGCTCATCAATGGCTCGAACAACCAGAACGTTGGAATCGTATTAAA
CTTGTCGTATCAGAAGAAGATGTTCGCAAAGCCTATCATCGTGCAATGGATTCAATGGCT
CGCTTAAATCGCACTGCATCACGCTTAATGCATAAATATAATGCGCATGGCGCAACTGAT
GTCACTGGATTCGGTCTTCTTGGTCATGCTCAAACTTTAGCTTCTCATCAAAAGAATGAG
GTTTCATTTGTTATTCACAACTTGCCAGTTATCGCAAAAATGGCCGCAGTCGCAAAAGCA
TGTGGAAATATGTTTCAACTGCTTCAAGGCCATTCCGCAGAAACGTCTGGCGGTCTTTTA
ATCTGCCTACCACGTGAACAAGCTGCTGCTTACTGTAAAGATATTGAAAAACAAGAAGGA
TATCAAGCATGGATTATTGGTATTGTCGAGAAAGGTAATCGATCAGCACGTATCATCGAC
AAACCACGTGTAATTGAAGTTCCTGCCAAGGAGTAA
>g12886.t2 Gene=g12886 Length=136
MDSMARLNRTASRLMHKYNAHGATDVTGFGLLGHAQTLASHQKNEVSFVIHNLPVIAKMA
AVAKACGNMFQLLQGHSAETSGGLLICLPREQAAAYCKDIEKQEGYQAWIIGIVEKGNRS
ARIIDKPRVIEVPAKE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g12886.t2 | Gene3D | G3DSA:3.90.650.10 | - | 1 | 136 | 0 |
| 2 | g12886.t2 | PANTHER | PTHR10256:SF1 | SELENIDE, WATER DIKINASE 2 | 1 | 134 | 0 |
| 3 | g12886.t2 | PANTHER | PTHR10256 | SELENIDE, WATER DIKINASE | 1 | 134 | 0 |
| 1 | g12886.t2 | Pfam | PF02769 | AIR synthase related protein, C-terminal domain | 3 | 124 | 0 |
| 4 | g12886.t2 | SUPERFAMILY | SSF56042 | PurM C-terminal domain-like | 2 | 119 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005524 | ATP binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
