Chromosome | Gene | Transcript | Category | ID | Start | End |
---|---|---|---|---|---|---|
chr_1 | g13018 | g13018.t3 | isoform | g13018.t3 | 27536374 | 27537757 |
chr_1 | g13018 | g13018.t3 | exon | g13018.t3.exon1 | 27536374 | 27536713 |
chr_1 | g13018 | g13018.t3 | cds | g13018.t3.CDS1 | 27536620 | 27536713 |
chr_1 | g13018 | g13018.t3 | exon | g13018.t3.exon2 | 27536782 | 27537504 |
chr_1 | g13018 | g13018.t3 | cds | g13018.t3.CDS2 | 27536782 | 27537504 |
chr_1 | g13018 | g13018.t3 | exon | g13018.t3.exon3 | 27537564 | 27537757 |
chr_1 | g13018 | g13018.t3 | cds | g13018.t3.CDS3 | 27537564 | 27537757 |
chr_1 | g13018 | g13018.t3 | TSS | g13018.t3 | NA | NA |
chr_1 | g13018 | g13018.t3 | TTS | g13018.t3 | NA | NA |
>g13018.t3 Gene=g13018 Length=1257
ATGAAGAAAATTTATATTGTCGGTGCAGGCATCTGTGGAATCTCAGCTGCTGTGCAAATT
GCAGAAAATTTCAAGAATCAAAATGTTGAAGTGATTGTTGTAGCTGAGAAATTTACACCA
AATACAACAAGTGATTTAGTTGCTGGCCTATGGGGTCCTTATCTAATGGGCAGCACTCCA
GAGCACAAAATTGTTCAATGGTCGAAAACGACACACGAATATTTTCATCATTTATGGTTG
AATGGATTGGCAGAAGAAGCTGGCATAACGATGATTCCTTGCTATCGTTTGTCAGCTGAA
GAAGAAATACAAAATCCATGCTGGAAAAATATTGTTTTTGGCTTTCGTGAATTGACTTCT
CAAGAGATTTCTAAAATGAGTCGTGAACATCGTCGTAAATATTTGAGTGGAAGCAATTTT
GTCACATTTTGTTGCGAACCAATCAAATTTATACCTTTTATGACAAAGAGATTTATAAAA
GCAGGCGGAAAGTTAGAGACGAGAAAATTGCGTGACTTTGATGAATTGAAAGATGCTGAC
TTGATTGTCAACTGCACGGGATTAGGCGGAAAAGAGCTTGGCGATGAACAGCTCCATCCA
ATTAGAGGACAAATTACACGAGTTAGTGCACCTTGGATGTATTTTGTTATGATTGACGAT
AGCGATGATGGCAATTATATTATTCCAAATGCAGAATCAGTCGTGCTTGGTGGAACACAT
CAGTACAATGACTTTAATACAAAATTTTCAACATCAGATAATGACTTTATCATGAATGGC
TGCCAGCGAATGGTCAAAAGTCTTGAAAATGCCGAAAGACTAAGAGACATTGTTGGCTTA
AGACCTGGAAGGGATCAAGTGAGACTTGAAATTGTGCATGGCACGAATGGAAAAGCACCG
GTAATTCATAATGTAGGACATGGTGGATGCGGTGTGACATTATCCTGGGGTTGTGGACAA
GAAGTTTTAGAGAAAACTGTTGAAGTGATGAAAGGAATGTCAAAATTGTAAATTTGAAAT
TTCTTTTTGTATGAAAAATAATTTTGAAATAACCGTTAAAATTTGAAATTTCACTAACAT
AAATAAAAGCTTTTTTTGTACATAATTACGTAAAATTGAAAAATTTAAAATTCAAAAATT
AGTCAAATAAATCACAAAAATAAATGTATTTAAAGTATTTTATTTCATTATCTCTAATTG
GTTATGTCAAGATGATTCTGAGTTGTTAGAATAAATTTAAAATTACAAAAGTAAAAG
>g13018.t3 Gene=g13018 Length=336
MKKIYIVGAGICGISAAVQIAENFKNQNVEVIVVAEKFTPNTTSDLVAGLWGPYLMGSTP
EHKIVQWSKTTHEYFHHLWLNGLAEEAGITMIPCYRLSAEEEIQNPCWKNIVFGFRELTS
QEISKMSREHRRKYLSGSNFVTFCCEPIKFIPFMTKRFIKAGGKLETRKLRDFDELKDAD
LIVNCTGLGGKELGDEQLHPIRGQITRVSAPWMYFVMIDDSDDGNYIIPNAESVVLGGTH
QYNDFNTKFSTSDNDFIMNGCQRMVKSLENAERLRDIVGLRPGRDQVRLEIVHGTNGKAP
VIHNVGHGGCGVTLSWGCGQEVLEKTVEVMKGMSKL
Transcript | Database | ID | Name | Start | End | E.value | |
---|---|---|---|---|---|---|---|
5 | g13018.t3 | Gene3D | G3DSA:3.40.50.720 | - | 4 | 323 | 1.0E-87 |
6 | g13018.t3 | Gene3D | G3DSA:3.30.9.10 | - | 89 | 283 | 1.0E-87 |
2 | g13018.t3 | PANTHER | PTHR11530 | D-AMINO ACID OXIDASE | 1 | 335 | 1.3E-92 |
12 | g13018.t3 | PIRSF | PIRSF000189 | D-aa_oxidase | 1 | 335 | 5.0E-79 |
1 | g13018.t3 | Pfam | PF01266 | FAD dependent oxidoreductase | 4 | 322 | 1.4E-35 |
8 | g13018.t3 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 17 | - |
9 | g13018.t3 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 3 | - |
10 | g13018.t3 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 4 | 12 | - |
11 | g13018.t3 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 13 | 17 | - |
7 | g13018.t3 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 18 | 336 | - |
3 | g13018.t3 | SUPERFAMILY | SSF51971 | Nucleotide-binding domain | 1 | 324 | 3.65E-20 |
4 | g13018.t3 | SUPERFAMILY | SSF54373 | FAD-linked reductases, C-terminal domain | 198 | 284 | 3.14E-18 |
IUPRED3 score over 0.5 is predictive of a disordered region.
GOID | TERM | ONTOLOGY |
---|---|---|
GO:0046416 | D-amino acid metabolic process | BP |
GO:0003884 | D-amino-acid oxidase activity | MF |
GO:0055114 | NA | NA |
GO:0071949 | FAD binding | MF |
GO:0016491 | oxidoreductase activity | MF |
TPM values are indicated as average +/- STDEV.
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed