Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Aspartate aminotransferase, mitochondrial.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g13095 g13095.t13 isoform g13095.t13 27933858 27934520
chr_1 g13095 g13095.t13 exon g13095.t13.exon1 27933858 27934257
chr_1 g13095 g13095.t13 cds g13095.t13.CDS1 27933897 27934257
chr_1 g13095 g13095.t13 exon g13095.t13.exon2 27934314 27934520
chr_1 g13095 g13095.t13 cds g13095.t13.CDS2 27934314 27934483
chr_1 g13095 g13095.t13 TTS g13095.t13 27934761 27934761
chr_1 g13095 g13095.t13 TSS g13095.t13 NA NA

Sequences

>g13095.t13 Gene=g13095 Length=607
GCATTAATTAAGAAAAAGAATTTATTCCCGTACTTTGATATGGCTTATCAAGGATTCGCT
AGTGGATCAGTTGATAAAGATGCATTTGCTGTTCGATTGTTTATTCGTGATGGACATCAA
ATTGCTTTGGCTCAAAGTTATGCAAAGAACATGGGTCTTTATGGAGAACGCGCTGGTGCA
TTTTCACTCATTACAAGTAGTAAAGATGAGGCTGAACGTACATTATCACAACTTAAGATT
CTCATTAGACCAATGTATTCGAATCCACCCATTCATGGTGCACGTATTGTTAGCACAATT
TTAAGTACACCCGATTTGAGATCAGAATGGTTGAAAGATGTAAAAGGAATGGCTGATCGT
ATTATTTCTGTTCGAGCAACATTGAGAAAGAATTTGGTTGGAAAATCTTGGATCAAAGAA
GAATTGGCAACACATTACCGATCAAATCGGTATGTTCTGTTTCACTGGAATGAATGCAGA
TCAAAGTACTCGTTTGTGCAACGAATTCAGCATCTATTTGACAAAAGATGGAAGAATTTC
AATGGCTGGTGTCACTTCAAAGAATGTTGAATACTTGGCTCATGGAATTCATGAAGTCAC
AAAGTAA

>g13095.t13 Gene=g13095 Length=176
MAYQGFASGSVDKDAFAVRLFIRDGHQIALAQSYAKNMGLYGERAGAFSLITSSKDEAER
TLSQLKILIRPMYSNPPIHGARIVSTILSTPDLRSEWLKDVKGMADRIISVRATLRKNLV
GKSWIKEELATHYRSNRYVLFHWNECRSKYSFVQRIQHLFDKRWKNFNGWCHFKEC

Protein features from InterProScan

Transcript Database ID Name Start End E.value
5 g13095.t13 Gene3D G3DSA:3.40.640.10 - 1 105 1.2E-38
2 g13095.t13 PANTHER PTHR11879 ASPARTATE AMINOTRANSFERASE 1 122 4.9E-52
1 g13095.t13 Pfam PF00155 Aminotransferase class I and II 1 124 1.0E-22
4 g13095.t13 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 33 46 -
3 g13095.t13 SUPERFAMILY SSF53383 PLP-dependent transferases 1 121 3.77E-30

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0009058 biosynthetic process BP
GO:0006520 cellular amino acid metabolic process BP
GO:0008483 transaminase activity MF
GO:0003824 catalytic activity MF
GO:0030170 pyridoxal phosphate binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed