Gene loci information

Transcript annotation

  • This transcript has been annotated as Cyclin-dependent kinase 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g13105 g13105.t5 TTS g13105.t5 27987386 27987386
chr_1 g13105 g13105.t5 isoform g13105.t5 27987634 27988657
chr_1 g13105 g13105.t5 exon g13105.t5.exon1 27987634 27988390
chr_1 g13105 g13105.t5 cds g13105.t5.CDS1 27987634 27988390
chr_1 g13105 g13105.t5 exon g13105.t5.exon2 27988443 27988503
chr_1 g13105 g13105.t5 cds g13105.t5.CDS2 27988443 27988498
chr_1 g13105 g13105.t5 exon g13105.t5.exon3 27988610 27988657
chr_1 g13105 g13105.t5 TSS g13105.t5 27988744 27988744

Sequences

>g13105.t5 Gene=g13105 Length=866
ATGGAGGACTTTCAAAAAATTGAGAAGATTGGTGAAGGCACATATGGGTAGCAATGAAAA
AGATACGCCTTGAATCTGAAGACGAAGGGATTCCTTCTACAGCGATTCGTGAAATTTCGT
TATTGAAAGAACTGAAACATCCAAATATCGTCTCTTTACAAGACGTTTTAATGGAAGATA
GTCGACTGTATTTAATCTTTGAATTTCTCTCGATGGATCTTAAAAAATACATGGATTCAC
TGCCCTCAGAAAAGATGTTGGATACAGAATTAGTTCGAAGCTACATGTATCAAATAACTG
CCGCAATTGTTTTTTGCCATAGACGACGAGTTTTGCATCGCGATTTGAAACCTCAAAATT
TACTTATAAATAAGGATGGTTTAATAAAGGTAGCTGATTTTGGATTGGGTCGTTCATTTG
GGATTCCTGTCCGTAATTATACACATGAGATTGTTACACTTTGGTATCGTGCGCCAGAAG
TTTTGCTTGGCTCACAACGCTATTCATGTCCAGTTGATGTATGGTCTTTAGGATGTATAT
TCGCTGAAATGGCTACGCGTAAGCCTCTATTCCAAGGTGATTCCGAAATAGATCAATTAT
TCCGAATGTTCAGGATTTTGAAGACACCAACAGATGATATCTGGCCAGGAGTCACACAAT
TGCCAGATTACAAACCAACATTTCCATGCTGGACACAAAACAATCTTGCTCAACATGTCA
AAAATATGGATTCAGCTGCATTTGATTTATTAAATAAAACTTTGATTTACGATCCAGCTC
TTCGCATTTCAGCAAAAGAAATGCTTGAACATAAATATTTTGATACAATCGATCGCAGCA
TCATAAGCTCGATCCCTCTTCATTAA

>g13105.t5 Gene=g13105 Length=270
MKKIRLESEDEGIPSTAIREISLLKELKHPNIVSLQDVLMEDSRLYLIFEFLSMDLKKYM
DSLPSEKMLDTELVRSYMYQITAAIVFCHRRRVLHRDLKPQNLLINKDGLIKVADFGLGR
SFGIPVRNYTHEIVTLWYRAPEVLLGSQRYSCPVDVWSLGCIFAEMATRKPLFQGDSEID
QLFRMFRILKTPTDDIWPGVTQLPDYKPTFPCWTQNNLAQHVKNMDSAAFDLLNKTLIYD
PALRISAKEMLEHKYFDTIDRSIISSIPLH

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g13105.t5 Gene3D G3DSA:3.30.200.20 Phosphorylase Kinase; domain 1 1 53 6.0E-21
8 g13105.t5 Gene3D G3DSA:1.10.510.10 Transferase(Phosphotransferase) domain 1 54 265 1.1E-71
2 g13105.t5 PANTHER PTHR24056:SF457 - 1 259 5.9E-110
3 g13105.t5 PANTHER PTHR24056 CELL DIVISION PROTEIN KINASE 1 259 5.9E-110
1 g13105.t5 Pfam PF00069 Protein kinase domain 1 256 1.2E-63
6 g13105.t5 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 93 105 -
9 g13105.t5 ProSiteProfiles PS50011 Protein kinase domain profile. 1 256 41.997
5 g13105.t5 SMART SM00220 serkin_6 1 256 3.4E-70
4 g13105.t5 SUPERFAMILY SSF56112 Protein kinase-like (PK-like) 1 259 2.97E-85

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005524 ATP binding MF
GO:0004672 protein kinase activity MF
GO:0006468 protein phosphorylation BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed