Gene loci information

Transcript annotation

  • This transcript has been annotated as Cytochrome P450 9e2.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g13107 g13107.t18 TTS g13107.t18 27990737 27990737
chr_1 g13107 g13107.t18 isoform g13107.t18 27990978 27993083
chr_1 g13107 g13107.t18 exon g13107.t18.exon1 27990978 27991985
chr_1 g13107 g13107.t18 cds g13107.t18.CDS1 27990978 27991985
chr_1 g13107 g13107.t18 exon g13107.t18.exon2 27992042 27992204
chr_1 g13107 g13107.t18 cds g13107.t18.CDS2 27992042 27992158
chr_1 g13107 g13107.t18 exon g13107.t18.exon3 27992322 27992354
chr_1 g13107 g13107.t18 exon g13107.t18.exon4 27992413 27992591
chr_1 g13107 g13107.t18 exon g13107.t18.exon5 27992658 27992885
chr_1 g13107 g13107.t18 exon g13107.t18.exon6 27993023 27993083
chr_1 g13107 g13107.t18 TSS g13107.t18 27993083 27993083

Sequences

>g13107.t18 Gene=g13107 Length=1672
AGATCGAGTGAAGTCGCGAAGGCGAGTGGTTGATAATTTACTTTGCTGAAGTTAATATCA
AGTCATTCTAATTCCAGTTTGTCATAATGATTATTTGGATTTTATTATTGATTGCCGCAG
TCATTTTGCTGTACAAATATGGAACGAGAAATTTCGATTACTTTCAAAAGAAAGGACTGG
CTTTTAATAAGCCTCATTTTCTTGTTGGGTCACGCCTAAGTACAGTTCTTGGTACAAAAA
ATATGATCGAAATGCTCACTGAAATTTATAATGAGCATAGAGATGAAAAAATTTCCGGCA
TGTTTGAATTCAATCGTCCAGCATATTTTATTCGTGACCCAGAGATGATTAAACGACTTT
GTATTAAAGAATTTGATTCATTCAGCGATCATCGACTTATTCTTTCTAAAGAAGCAGAAC
CTCTCTTTGCTTCTGCACTTTTCGGTTTGACGGGTCAAAAATGGAGAGACATGCGAGCAA
CACTCTCTCCAGCGTTTACTGCAAAATGCGTCTAATGTTTAAGCTCATAAACGACGTTGG
CTCTCAAATGTCGAATACTGTTCTTGAACAAATAAATAAAGGAGCTGACAACAAAATTGA
GTTTAAAGAATTTGCTCAGAAATTTACAATCGATATTATAGCAAGTTGCGCATTTGGATT
AGAGATAAATTCATTCAATAATCCCAATAATGACTTCCTGAGAATTGCAAGAAAAGCAAC
AAATTTCGCTACCTTTAAGACCACAATAAAATTAGTGGGTTTACTTGGTGCACCATGGTT
AATGAAAATATTTAAAATCAAGTTTTTGGATGAAGAATTTTATAAATTCTTTGGTGCAAT
GATGACAGATACTATAAAAACTAGAGAAGAGAAGAAAATAACTCGTAATGATATGATCGA
TTTGATATTGCAAGCAAAACACGGTAAACAACTTGATTATGACAATGAAGAGCATACAGT
TGATGGTTTCGCAACAGTTGAGGAATCACAATTAGGAAAAGAAAAAGTTAAGAGAACATG
GGAAGATGATGAACTTTTAGCACAATGTGTTGGCTTCTTTTTTGGTGGATTTGAAACAGT
TTCGAGTGTCATGACTTTTATGGCTGCTGAATTGATTATTGATCCTAATATTCAGAAAAA
ATTACAAGACGAAATTGATGAAGTTCACAAGTCATTGAACGGAGAAACTTTGACATACGA
GCATGTACAAAAAATGAAATACATGGATATGGTTGTTTGCGAGACTCTACGAAAATGGCC
ACCTGCACCAATTGTTGATAGAAAGTGCACTAAAGAATTTAATTTCGAATATGATGACAA
AAAATTCATTATGGAATATGATAAAAATTTCTATGTTCCTATCTATTCATTACATCATGA
TGAACGTTATTTCCCAGAACCAGAAAAATTCGATCCTGAACGATTTAATGATGAAAATAA
GAAAAATATCAGACAAGATTGTTATATACCTTTTGGTATTGGTCCAAGAAATTGCATTGG
AAACCGTTTTGCTTTACTTGAAGTGAAAACAATTTTTTACTACCTCCTATTAAACTTTAC
ATTTGAAGCGACAAATGAAACTGAAATTCCCCTCAAATTGGGAAGAAGTCAAACAACATT
ACAACTTGAAAATGGATTGAAATGTGCCTTGATTCCACGAGCTGAAGAATAA

>g13107.t18 Gene=g13107 Length=374
MSNTVLEQINKGADNKIEFKEFAQKFTIDIIASCAFGLEINSFNNPNNDFLRIARKATNF
ATFKTTIKLVGLLGAPWLMKIFKIKFLDEEFYKFFGAMMTDTIKTREEKKITRNDMIDLI
LQAKHGKQLDYDNEEHTVDGFATVEESQLGKEKVKRTWEDDELLAQCVGFFFGGFETVSS
VMTFMAAELIIDPNIQKKLQDEIDEVHKSLNGETLTYEHVQKMKYMDMVVCETLRKWPPA
PIVDRKCTKEFNFEYDDKKFIMEYDKNFYVPIYSLHHDERYFPEPEKFDPERFNDENKKN
IRQDCYIPFGIGPRNCIGNRFALLEVKTIFYYLLLNFTFEATNETEIPLKLGRSQTTLQL
ENGLKCALIPRAEE

Protein features from InterProScan

Transcript Database ID Name Start End E.value
15 g13107.t18 Gene3D G3DSA:1.10.630.10 Cytochrome p450 1 374 1.1E-94
2 g13107.t18 PANTHER PTHR24292 CYTOCHROME P450 8 354 7.4E-134
3 g13107.t18 PANTHER PTHR24292:SF90 CYTOCHROME P450 317A1-RELATED 8 354 7.4E-134
7 g13107.t18 PRINTS PR00463 E-class P450 group I signature 162 179 1.3E-22
11 g13107.t18 PRINTS PR00385 P450 superfamily signature 173 190 9.8E-10
4 g13107.t18 PRINTS PR00463 E-class P450 group I signature 182 208 1.3E-22
9 g13107.t18 PRINTS PR00385 P450 superfamily signature 228 239 9.8E-10
5 g13107.t18 PRINTS PR00463 E-class P450 group I signature 271 295 1.3E-22
8 g13107.t18 PRINTS PR00463 E-class P450 group I signature 306 316 1.3E-22
10 g13107.t18 PRINTS PR00385 P450 superfamily signature 307 316 9.8E-10
6 g13107.t18 PRINTS PR00463 E-class P450 group I signature 316 339 1.3E-22
12 g13107.t18 PRINTS PR00385 P450 superfamily signature 316 327 9.8E-10
1 g13107.t18 Pfam PF00067 Cytochrome P450 2 357 4.2E-67
14 g13107.t18 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 309 318 -
13 g13107.t18 SUPERFAMILY SSF48264 Cytochrome P450 6 371 3.27E-85

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0020037 heme binding MF
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen MF
GO:0005506 iron ion binding MF
GO:0055114 NA NA

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values