Gene loci information

Transcript annotation

  • This transcript has been annotated as Cytochrome P450 9e2.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g13107 g13107.t8 TTS g13107.t8 27990737 27990737
chr_1 g13107 g13107.t8 isoform g13107.t8 27990978 27992860
chr_1 g13107 g13107.t8 exon g13107.t8.exon1 27990978 27992204
chr_1 g13107 g13107.t8 cds g13107.t8.CDS1 27990978 27991868
chr_1 g13107 g13107.t8 exon g13107.t8.exon2 27992322 27992354
chr_1 g13107 g13107.t8 exon g13107.t8.exon3 27992413 27992591
chr_1 g13107 g13107.t8 exon g13107.t8.exon4 27992658 27992860
chr_1 g13107 g13107.t8 TSS g13107.t8 27993083 27993083

Sequences

>g13107.t8 Gene=g13107 Length=1642
ATGATTATTTGGATTTTATTATTGATTGCCGCAGTCATTTTGCTGTACAAATATGGAACG
AGAAATTTCGATTACTTTCAAAAGAAAGGACTGGCTTTTAATAAGCCTCATTTTCTTGTT
GGGTCACGCCTAAGTACAGTTCTTGGTACAAAAAATATGATCGAAATGCTCACTGAAATT
TATAATGAGCATAGAGATGAAAAAATTTCCGGCATGTTTGAATTCAATCGTCCAGCATAT
TTTATTCGTGACCCAGAGATGATTAAACGACTTTGTATTAAAGAATTTGATTCATTCAGC
GATCATCGACTTATTCTTTCTAAAGAAGCAGAACCTCTCTTTGCTTCTGCACTTTTCGGT
TTGACGGGTCAAAAATGGAGAGACATGCGAGCAACACTCTCTCCAGCGTTTACTGCAAAA
TGCGTCTAATGTTTAAGCTCATAAACGACGTTGGCTCTCAAATGTCGAATACTGTTCTTG
AACAAATAAATAAAGGAGCTGACAACAAAATTGAGTTTAAAGAATTTGCTCAGAAATTTA
CAATCGATATTATAGCAAGTTGCGCATTTGGATTAGAGGTATCTTATCTTTGAAAATTTT
ATCGTTATTTTAAATTTAATCTTTTATTATATAGATAAATTCATTCAATAATCCCAATAA
TGACTTCCTGAGAATTGCAAGAAAAGCAACAAATTTCGCTACCTTTAAGACCACAATAAA
ATTAGTGGGTTTACTTGGTGCACCATGGTTAATGAAAATATTTAAAATCAAGTTTTTGGA
TGAAGAATTTTATAAATTCTTTGGTGCAATGATGACAGATACTATAAAAACTAGAGAAGA
GAAGAAAATAACTCGTAATGATATGATCGATTTGATATTGCAAGCAAAACACGGTAAACA
ACTTGATTATGACAATGAAGAGCATACAGTTGATGGTTTCGCAACAGTTGAGGAATCACA
ATTAGGAAAAGAAAAAGTTAAGAGAACATGGGAAGATGATGAACTTTTAGCACAATGTGT
TGGCTTCTTTTTTGGTGGATTTGAAACAGTTTCGAGTGTCATGACTTTTATGGCTGCTGA
ATTGATTATTGATCCTAATATTCAGAAAAAATTACAAGACGAAATTGATGAAGTTCACAA
GTCATTGAACGGAGAAACTTTGACATACGAGCATGTACAAAAAATGAAATACATGGATAT
GGTTGTTTGCGAGACTCTACGAAAATGGCCACCTGCACCAATTGTTGATAGAAAGTGCAC
TAAAGAATTTAATTTCGAATATGATGACAAAAAATTCATTATGGAATATGATAAAAATTT
CTATGTTCCTATCTATTCATTACATCATGATGAACGTTATTTCCCAGAACCAGAAAAATT
CGATCCTGAACGATTTAATGATGAAAATAAGAAAAATATCAGACAAGATTGTTATATACC
TTTTGGTATTGGTCCAAGAAATTGCATTGGAAACCGTTTTGCTTTACTTGAAGTGAAAAC
AATTTTTTACTACCTCCTATTAAACTTTACATTTGAAGCGACAAATGAAACTGAAATTCC
CCTCAAATTGGGAAGAAGTCAAACAACATTACAACTTGAAAATGGATTGAAATGTGCCTT
GATTCCACGAGCTGAAGAATAA

>g13107.t8 Gene=g13107 Length=296
MKIFKIKFLDEEFYKFFGAMMTDTIKTREEKKITRNDMIDLILQAKHGKQLDYDNEEHTV
DGFATVEESQLGKEKVKRTWEDDELLAQCVGFFFGGFETVSSVMTFMAAELIIDPNIQKK
LQDEIDEVHKSLNGETLTYEHVQKMKYMDMVVCETLRKWPPAPIVDRKCTKEFNFEYDDK
KFIMEYDKNFYVPIYSLHHDERYFPEPEKFDPERFNDENKKNIRQDCYIPFGIGPRNCIG
NRFALLEVKTIFYYLLLNFTFEATNETEIPLKLGRSQTTLQLENGLKCALIPRAEE

Protein features from InterProScan

Transcript Database ID Name Start End E.value
15 g13107.t8 Gene3D G3DSA:1.10.630.10 Cytochrome p450 1 296 2.0E-78
2 g13107.t8 PANTHER PTHR24292 CYTOCHROME P450 3 276 5.6E-113
3 g13107.t8 PANTHER PTHR24292:SF90 CYTOCHROME P450 317A1-RELATED 3 276 5.6E-113
4 g13107.t8 PRINTS PR00463 E-class P450 group I signature 84 101 4.8E-23
11 g13107.t8 PRINTS PR00385 P450 superfamily signature 95 112 4.5E-10
8 g13107.t8 PRINTS PR00463 E-class P450 group I signature 104 130 4.8E-23
9 g13107.t8 PRINTS PR00385 P450 superfamily signature 150 161 4.5E-10
5 g13107.t8 PRINTS PR00463 E-class P450 group I signature 193 217 4.8E-23
6 g13107.t8 PRINTS PR00463 E-class P450 group I signature 228 238 4.8E-23
12 g13107.t8 PRINTS PR00385 P450 superfamily signature 229 238 4.5E-10
7 g13107.t8 PRINTS PR00463 E-class P450 group I signature 238 261 4.8E-23
10 g13107.t8 PRINTS PR00385 P450 superfamily signature 238 249 4.5E-10
1 g13107.t8 Pfam PF00067 Cytochrome P450 24 279 1.6E-61
14 g13107.t8 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 231 240 -
13 g13107.t8 SUPERFAMILY SSF48264 Cytochrome P450 4 293 1.31E-74

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0020037 heme binding MF
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen MF
GO:0005506 iron ion binding MF
GO:0055114 NA NA

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values