Chromosome | Gene | Transcript | Category | ID | Start | End |
---|---|---|---|---|---|---|
chr_1 | g13107 | g13107.t9 | TTS | g13107.t9 | 27990737 | 27990737 |
chr_1 | g13107 | g13107.t9 | isoform | g13107.t9 | 27990978 | 27992860 |
chr_1 | g13107 | g13107.t9 | exon | g13107.t9.exon1 | 27990978 | 27991985 |
chr_1 | g13107 | g13107.t9 | cds | g13107.t9.CDS1 | 27990978 | 27991985 |
chr_1 | g13107 | g13107.t9 | exon | g13107.t9.exon2 | 27992042 | 27992354 |
chr_1 | g13107 | g13107.t9 | cds | g13107.t9.CDS2 | 27992042 | 27992200 |
chr_1 | g13107 | g13107.t9 | exon | g13107.t9.exon3 | 27992413 | 27992591 |
chr_1 | g13107 | g13107.t9 | exon | g13107.t9.exon4 | 27992654 | 27992860 |
chr_1 | g13107 | g13107.t9 | TSS | g13107.t9 | 27993083 | 27993083 |
>g13107.t9 Gene=g13107 Length=1707
ATGATTATTTGGATTTTATTATTGATTGCCGCAGTCATTTTGCTGTACAAATATGGAACG
AGAAATTTCGATTACTTTCAAAAGAAAGGACTGGCTTTTAATAAGCCTCATTTTCTTGTT
GGGTCACGCCTAAGTACAGTTCTTGGTACAAAAAATATGATCGAAATGCTCACTGAAATT
TATAATGAGCATAGAGATGAAAAGTGAAATTTCCGGCATGTTTGAATTCAATCGTCCAGC
ATATTTTATTCGTGACCCAGAGATGATTAAACGACTTTGTATTAAAGAATTTGATTCATT
CAGCGATCATCGACTTATTCTTTCTAAAGAAGCAGAACCTCTCTTTGCTTCTGCACTTTT
CGGTTTGACGGGTCAAAAATGGAGAGACATGCGAGCAACACTCTCTCCAGCGTTTACTGG
TTAGTTATACACATATTGCATCATCTGGAAATAATAGCGCACGCTCAATTTTTTTGTTTA
TATTCTAATAATAGAAATGTGATGAAAACTTTTTCTTTTTCATACACTTTAGGCAGCAAA
ATGCGTCTAATGTTTAAGCTCATAAACGACGTTGGCTCTCAAATGTCGAATACTGTTCTT
GAACAAATAAATAAAGGAGCTGACAACAAAATTGAGTTTAAAGAATTTGCTCAGAAATTT
ACAATCGATATTATAGCAAGTTGCGCATTTGGATTAGAGATAAATTCATTCAATAATCCC
AATAATGACTTCCTGAGAATTGCAAGAAAAGCAACAAATTTCGCTACCTTTAAGACCACA
ATAAAATTAGTGGGTTTACTTGGTGCACCATGGTTAATGAAAATATTTAAAATCAAGTTT
TTGGATGAAGAATTTTATAAATTCTTTGGTGCAATGATGACAGATACTATAAAAACTAGA
GAAGAGAAGAAAATAACTCGTAATGATATGATCGATTTGATATTGCAAGCAAAACACGGT
AAACAACTTGATTATGACAATGAAGAGCATACAGTTGATGGTTTCGCAACAGTTGAGGAA
TCACAATTAGGAAAAGAAAAAGTTAAGAGAACATGGGAAGATGATGAACTTTTAGCACAA
TGTGTTGGCTTCTTTTTTGGTGGATTTGAAACAGTTTCGAGTGTCATGACTTTTATGGCT
GCTGAATTGATTATTGATCCTAATATTCAGAAAAAATTACAAGACGAAATTGATGAAGTT
CACAAGTCATTGAACGGAGAAACTTTGACATACGAGCATGTACAAAAAATGAAATACATG
GATATGGTTGTTTGCGAGACTCTACGAAAATGGCCACCTGCACCAATTGTTGATAGAAAG
TGCACTAAAGAATTTAATTTCGAATATGATGACAAAAAATTCATTATGGAATATGATAAA
AATTTCTATGTTCCTATCTATTCATTACATCATGATGAACGTTATTTCCCAGAACCAGAA
AAATTCGATCCTGAACGATTTAATGATGAAAATAAGAAAAATATCAGACAAGATTGTTAT
ATACCTTTTGGTATTGGTCCAAGAAATTGCATTGGAAACCGTTTTGCTTTACTTGAAGTG
AAAACAATTTTTTACTACCTCCTATTAAACTTTACATTTGAAGCGACAAATGAAACTGAA
ATTCCCCTCAAATTGGGAAGAAGTCAAACAACATTACAACTTGAAAATGGATTGAAATGT
GCCTTGATTCCACGAGCTGAAGAATAA
>g13107.t9 Gene=g13107 Length=388
MRLMFKLINDVGSQMSNTVLEQINKGADNKIEFKEFAQKFTIDIIASCAFGLEINSFNNP
NNDFLRIARKATNFATFKTTIKLVGLLGAPWLMKIFKIKFLDEEFYKFFGAMMTDTIKTR
EEKKITRNDMIDLILQAKHGKQLDYDNEEHTVDGFATVEESQLGKEKVKRTWEDDELLAQ
CVGFFFGGFETVSSVMTFMAAELIIDPNIQKKLQDEIDEVHKSLNGETLTYEHVQKMKYM
DMVVCETLRKWPPAPIVDRKCTKEFNFEYDDKKFIMEYDKNFYVPIYSLHHDERYFPEPE
KFDPERFNDENKKNIRQDCYIPFGIGPRNCIGNRFALLEVKTIFYYLLLNFTFEATNETE
IPLKLGRSQTTLQLENGLKCALIPRAEE
Transcript | Database | ID | Name | Start | End | E.value | |
---|---|---|---|---|---|---|---|
15 | g13107.t9 | Gene3D | G3DSA:1.10.630.10 | Cytochrome p450 | 1 | 388 | 3.0E-97 |
2 | g13107.t9 | PANTHER | PTHR24292 | CYTOCHROME P450 | 1 | 368 | 3.1E-136 |
3 | g13107.t9 | PANTHER | PTHR24292:SF90 | CYTOCHROME P450 317A1-RELATED | 1 | 368 | 3.1E-136 |
7 | g13107.t9 | PRINTS | PR00463 | E-class P450 group I signature | 176 | 193 | 1.5E-22 |
11 | g13107.t9 | PRINTS | PR00385 | P450 superfamily signature | 187 | 204 | 1.1E-9 |
8 | g13107.t9 | PRINTS | PR00463 | E-class P450 group I signature | 196 | 222 | 1.5E-22 |
10 | g13107.t9 | PRINTS | PR00385 | P450 superfamily signature | 242 | 253 | 1.1E-9 |
6 | g13107.t9 | PRINTS | PR00463 | E-class P450 group I signature | 285 | 309 | 1.5E-22 |
5 | g13107.t9 | PRINTS | PR00463 | E-class P450 group I signature | 320 | 330 | 1.5E-22 |
9 | g13107.t9 | PRINTS | PR00385 | P450 superfamily signature | 321 | 330 | 1.1E-9 |
4 | g13107.t9 | PRINTS | PR00463 | E-class P450 group I signature | 330 | 353 | 1.5E-22 |
12 | g13107.t9 | PRINTS | PR00385 | P450 superfamily signature | 330 | 341 | 1.1E-9 |
1 | g13107.t9 | Pfam | PF00067 | Cytochrome P450 | 8 | 371 | 5.1E-68 |
14 | g13107.t9 | ProSitePatterns | PS00086 | Cytochrome P450 cysteine heme-iron ligand signature. | 323 | 332 | - |
13 | g13107.t9 | SUPERFAMILY | SSF48264 | Cytochrome P450 | 2 | 385 | 1.14E-86 |
IUPRED3 score over 0.5 is predictive of a disordered region.
GOID | TERM | ONTOLOGY |
---|---|---|
GO:0020037 | heme binding | MF |
GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | MF |
GO:0005506 | iron ion binding | MF |
GO:0055114 | NA | NA |
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
TPM values are indicated as average +/- STDEV.
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.