Gene loci information

Transcript annotation

  • This transcript has been annotated as Protein kibra.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g13111 g13111.t3 TSS g13111.t3 28006393 28006393
chr_1 g13111 g13111.t3 isoform g13111.t3 28006677 28016243
chr_1 g13111 g13111.t3 exon g13111.t3.exon1 28006677 28006798
chr_1 g13111 g13111.t3 cds g13111.t3.CDS1 28006677 28006798
chr_1 g13111 g13111.t3 exon g13111.t3.exon2 28015620 28016243
chr_1 g13111 g13111.t3 cds g13111.t3.CDS2 28015620 28016241
chr_1 g13111 g13111.t3 TTS g13111.t3 NA NA

Sequences

>g13111.t3 Gene=g13111 Length=746
ATGAATAGAAATGAAGAGTTGCCTTTGCCTTGTAATTGGGAAAAAGCCCAAGATTATGAT
GGAAAAACATATTACATTGATCATGCGAAAAAGATAACGACATGGATAGATCCAAGAGAT
AGATATACAAAGCCAGAAACTTTTGCAGATTGTATTGGCAATGAGCTTCCATTAGGTTGG
GAAGAAGCATATGATCCACAAATTGGCATCTTTTATATCAATCACAATAGTCAATGTACA
CAGTTAGAAGATCCACGATTAGAATGGAAGGAAATGCAAGAACAAATGTTACGCGAATAC
ATGTCATCAGCAGAAGAGCAGCTAGAGGCAAAGAAAGAAATTTACGATATAAAACAGCAG
AGATTACTGCTAGCACAAGACGAGTACAATCATTTAAATGCATTGGCCACAAGTCGAACG
AGTTTATGTTCATCAGCGAGTTCATGCAGTACCAAATTTGATCCTGAACTTCTTCGTGCT
GATCTTGCGTTGGCTAAAGAACGTGTTTATCGTTTACGAACAGAAATGGATCGAATTCAG
CATGAAATGTCATATACAAAGAAAGGAGTTGAAACGCTGCATAATGTGGAACAGAAGCTT
AATAATCATCAGAATGGTTGCTATAGTGTAAATGAAGCACAAGCAATAATGGAAGAAGTG
AAGAAAATTCAAAAATCACTTTTATTGGGCGAAAGAGAAAAGAAAGAACTTATGCATAGT
CTAGCACAAGTAAAAGAAGACCTCAC

>g13111.t3 Gene=g13111 Length=248
MNRNEELPLPCNWEKAQDYDGKTYYIDHAKKITTWIDPRDRYTKPETFADCIGNELPLGW
EEAYDPQIGIFYINHNSQCTQLEDPRLEWKEMQEQMLREYMSSAEEQLEAKKEIYDIKQQ
RLLLAQDEYNHLNALATSRTSLCSSASSCSTKFDPELLRADLALAKERVYRLRTEMDRIQ
HEMSYTKKGVETLHNVEQKLNNHQNGCYSVNEAQAIMEEVKKIQKSLLLGEREKKELMHS
LAQVKEDL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
11 g13111.t3 CDD cd00201 WW 10 40 1.54271E-8
12 g13111.t3 CDD cd00201 WW 57 87 7.14151E-6
10 g13111.t3 Coils Coil Coil 101 121 -
9 g13111.t3 Coils Coil Coil 162 182 -
8 g13111.t3 Gene3D G3DSA:2.20.70.10 - 1 41 6.5E-15
7 g13111.t3 Gene3D G3DSA:2.20.70.10 - 56 88 5.1E-13
3 g13111.t3 PANTHER PTHR14791:SF22 PROTEIN KIBRA 5 247 3.9E-99
4 g13111.t3 PANTHER PTHR14791 BOMB/KIRA PROTEINS 5 247 3.9E-99
2 g13111.t3 Pfam PF00397 WW domain 9 38 8.6E-8
1 g13111.t3 Pfam PF00397 WW domain 56 85 2.7E-6
13 g13111.t3 ProSitePatterns PS01159 WW/rsp5/WWP domain signature. 13 38 -
16 g13111.t3 ProSiteProfiles PS50020 WW/rsp5/WWP domain profile. 7 40 14.856
17 g13111.t3 ProSiteProfiles PS50020 WW/rsp5/WWP domain profile. 54 87 12.649
14 g13111.t3 SMART SM00456 ww_5 8 40 1.0E-9
15 g13111.t3 SMART SM00456 ww_5 55 87 6.9E-5
5 g13111.t3 SUPERFAMILY SSF51045 WW domain 4 39 3.62E-12
6 g13111.t3 SUPERFAMILY SSF51045 WW domain 54 88 1.41E-9

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005515 protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed