General information for g13152.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Nuclear pore complex protein Nup205.
Parent gene
- The parent gene g13152 is located on chr_1: 28267090..28268312 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13152 | g13152.t1 | TSS | g13152.t1 | 28262052 | 28262052 |
| chr_1 | g13152 | g13152.t1 | isoform | g13152.t1 | 28262196 | 28268312 |
| chr_1 | g13152 | g13152.t1 | exon | g13152.t1.exon1 | 28262196 | 28262205 |
| chr_1 | g13152 | g13152.t1 | cds | g13152.t1.CDS1 | 28262196 | 28262205 |
| chr_1 | g13152 | g13152.t1 | exon | g13152.t1.exon2 | 28262268 | 28262419 |
| chr_1 | g13152 | g13152.t1 | cds | g13152.t1.CDS2 | 28262268 | 28262419 |
| chr_1 | g13152 | g13152.t1 | exon | g13152.t1.exon3 | 28262481 | 28263060 |
| chr_1 | g13152 | g13152.t1 | cds | g13152.t1.CDS3 | 28262481 | 28263060 |
| chr_1 | g13152 | g13152.t1 | exon | g13152.t1.exon4 | 28263123 | 28264044 |
| chr_1 | g13152 | g13152.t1 | cds | g13152.t1.CDS4 | 28263123 | 28264044 |
| chr_1 | g13152 | g13152.t1 | exon | g13152.t1.exon5 | 28264106 | 28268312 |
| chr_1 | g13152 | g13152.t1 | cds | g13152.t1.CDS5 | 28264106 | 28268312 |
| chr_1 | g13152 | g13152.t1 | TTS | g13152.t1 | NA | NA |
Sequences
>g13152.t1 Gene=g13152 Length=5871
ATGGCTGAAGTTACTGTCGACGATTTATGGACTCCATTTAAACAGCTCTATCATCAAATA
CAAACATTTCTTGTTTCTAATGATAAAGATGTGAGTTTAGCGAGTTTCGAAGCACTACTT
AGAAAGAATAAACAAAACTTCTCATCATTTTTGATAAATCCTCCAAAGAATGAAGGAAGT
CGTAAAGAAATTATGCAAGGTGTGACACATGGAATAACACTGCCTACATTAGGTTCAACA
ACATTATCAAAAGATTTAGTTGATGAGACAATCATTCTCTCTGATATGTACAATTTAAAT
GAATTCATTGCATTAGAGTTGCTAACAACTGCTCAACAGCAAATGCCTCAATATCCTGGA
TTACCAAGAGGCTTAGTTGCCATTCTTCTTTATTATGATGGACGAAAAACATTGACATCT
GCCTTAAAAGACTTGATGCAAGCTCGATTAGGAGTTTCATGGTGCACAGATAATGTCTCA
TTAGATTTAATTCAACTTATTACAACATACACTGACTCATTAGTGTCTGAGGGAATTTTA
AAGAAAATCATCGAGTTACTAAAATCACTTGATATAAGCAAAGAACTTGATTTACTTACA
AAAAATCGTGCTCTTGGTCCACCGAAGCATCATCGAATGGTTCTCGATTTATTTGATGAA
ATTCGCCAAAATCTTGCATCGATAATTTTTAATTATGCAGCTCAGTCAGGACTACCAAAA
GATGTTACACTTTCACTTATTCAATATTTAAAGAAATCAAAACTGAGCGGTGCGCGTGGC
GAAATTGGAGATGTTACAACAACTTTAATGATGGCATTATTTTATGCACTTGACTTGAGT
ATCATACATCGACGTGAAGATGGAGAAGAAGTAGTTAGAAGATTGCCAATAATCAATGAT
GAGAGTTTTTTTGATGATGTTATGCAAGAATTATTAATTAATGAAGATGCTTCTGATGTG
ACTGAAAAATGGGAATGTCCAGGCTTACGTGCTTTAGCAATTTTTGCACTTGGACTTGCT
TGTGGAACTTTGAAAATGGCTCCTCAAAATTTATATCCAAGTGCTCAACAATTAGTTGAA
AAAGACGAAGAGCTGATTGATTTCGCCATTCATCTTAAAGTTTTTGATTTTTTAAATTTC
ACATTTTTGGAAAATTCAATTATCTTTAGGACTGAATTCTTTTATCGTCGCCTACACATA
CTGTTTACTGATTTTATTGAAATTATGCACACAAAAGTAACAGAACTAAGAGCAAGAGCA
GATGAAACAGCAAGAACTGTACAAAATTATCAACAACAAGGTCTTGAACCGCCAAGTAAT
ATCGATAATAATTTTGGAAATTTGCTTTGTGCTATTGGCAAGTTTTATGAAAACGATCGG
CTTAATCTTCAACTTAGTCTTGAATACTGGGGACCAATGGAGCACAGTGGCACTTACCAT
CGAACTTCTTCACGATCTGTTTGCTTGTTCAAATTTATGCGTTTAGCTGGCGATTTATTG
CCACAAACTCTCTTTATACCATATTTGAAAATGTTGGCTGGTCTCTCAGGAAATCCACAA
GCTGCTCGAAATGCTTTCAATTTATTAAAACAGGGAAATGGAACTGCAGGGACTGCATCC
GTTTCATGGGATCATTTCTTTGCATCTTTAGCTAGATACTATCAAACATTACGAAGTGAG
CAACATCCGGGTACTGATACAGTTTATCGCTCTAGGTTATATTCTCGTGCTATCAGTCCA
CAAGAGATTGCTGGTCTTCAAGCAGTTTTACAAGTTATTCGAATTGTTGCAACACACGAT
GAAGTTGCGCGAATTGCTTTGTGTGAACAACCAAATTATTCACCGATTCCCATCATGTTG
GGTTTAGTCAGCTGTTCAATTGTGATTCCTCTCAAGGCTAATTTAGTAGCTGCTTTGGCT
GCATTAGGACGTTCAAGTGAAACAGCGATTCAATTATGGAATGCTTTAGAGACATCACAA
ATTATCTGCACGGTTCCATCTGTTAGCAATTTTGGTAATCGTGGTATAGAATCTGAATTG
GAGGAAATCGAAGCAAGAAACGAATCCTATCCGCTAACTAAAGCAGTCCTTGATCTTTTG
TATACAATTTCGAGTGTAATCATTCCAAAAAATCTTGGTGCCGGAACTCGAAAAACTGGT
CTTGATCCTTACATTGTTTTCATCATTGAAACTGTATTTTTAAAATTCTACAATCGAAAC
TATAAAGATTCACAAGAAAAATGGGAAGTTGCAGAAAAATGTCTTCAAATTTGTGACATG
TTTATGAGAATTTATGAAACATCACCAAGTGATTTTCCCAATTCACTTGGAAGCAATGAT
GAGAACTCACCACCAGGTTTTCATATTATGCTTCAATTACATACAAAATCAGAATTTCTA
CGGCTTATTCTACATTTAATTGATGAAGCTTGTGTAATGCTTGACACTTACTCACCATTT
GCTGGAAAGAAACAACTTGAGAATACAATTTTTTATGGACTTAACATCATTTCAATGGGG
CTTGAAAAGCAAAATATATTCTTTGATGCTCACTTCTCTGCAAATAGTCCAATTTTAATG
ACTGGTTGTTCTAAATTATTGCTTGATGTAAATCCAAGAACAGGAAGAAGTGATCACATG
CTGAATATAACAAAAATGGTTACTTACAACTCATGGTTGCCGCGACAAGCTTTGTTGGCA
ATAAAGATTTTGCATTACATAGTTGCACAACCAAATGTTAATAATCAGATACTTGGCATA
TTAACAAGCAATGAAAGAATTAAAATGGAGATTAGACAGGGTTTTGTCGAATGTTTAGAA
AATGAAGTTGATATTGATAGTGATCCAGAAGCATCATTCTTACTCGAAATTGAGATAAAA
GAAGAAATCATCAGTTTACTCAATGATACACTGCCACAATCTGCTCCAAATATTGCACAT
TATCTTTTGGGTTTCGACATTAGCAAAGACATTAAATTGAGCAATTTACAACAGCCTGGA
ATATTAGATTTTCCGAGTACTTGTTCAAAATCTTTAATCACTATTCTTGATCAATATTTG
GAATATGTAAAATCTCACACTTCTGTTCCTGAGCCGCGTTTAAAGCTTATAGAAAGTGCT
TATGGTTTGGTGTACAGTTTATGCTTCAATTTCAAAACATCGGAAGTATTTATGAGATTT
TTGCGTTCATCAGGTGACTTTTTATGTCGACACGTAACCGAATTGCCATTCACAAATGAC
AATAGCCCTCACGTATTGAATCAGATGACTGCACTATTGAAAAGTGTCGCGATTGAATTG
AAATTGACTGCTGAAAAAAATCAACTCAGCCATTTCAGCAACATGTGCAAAATTTTGGGA
CTGCTATCAAATACAAACTATTCAGATAATGTTCAAGTTGAATTGGCACATTTTCAACAA
ACAGTAATTGGAATGGATGCAATGCAAATGTCACAAAAAAAGAATAAAGCATCGAAAATG
TTGTGCGAACTTCTCGATTGTCCTGAGTTTGAATTAAAGCCATTAGATAGACCTAAATGG
GATCATTTTGATAATTCCTTAATGAATAATTTATTTGCAAATTGTGAAACTATTGTTTCA
TCAGGCGTAAAATTAATTGATGTTAAGAAAGTTCATGCGATTTTACGAGAGGAATTAAAT
TCTGTTCAATCAACAATTGCAGCAGGACAAAGACAATACATTTTACAAGACATTGAATCT
ATAATGCTTTACGCACTACAAGCTAATCGTCAAAAAATGGTCATCAATTCAAATGTCAAA
TTTTTAGAAGCATGGAGCCAAGTTACTGAAATAATCTTCAGTGTTCAACAACCTCTTATA
TTCAGCAATGAAGTTAAAAGAAATTTGATTATTGAAATTTTAGAAGTTCTATTGAAAAAG
GTAGTTCCAGCTCAAGTCGCTCAAATTATCCCAGAATTATCAAATCTTGCTTCATCAACT
GTTCTATTATTACTGATGAATTTACGAGCAGCATCATTAAAGAAGATTGAAAGTCATTTA
AGTGATTCACGCGATTCAACATTCTTTGGAAATCAAACGTCAATTTCTCATGATCATACA
ATAACATCTCCAACTAAATCAAATTCATCGCATTTAAAATATATATTCAGAAATATAATT
GAATGGATAATAATAAGTGGAAGTTCAGGAAGTCAAAAATTGCGAATGAATTTATATGCT
GCTCTTTTAAATTTTATCTATATAATCAAGGGAGAAAATGATAAGGATAAAAATACAATT
GATGAACCAAAAGAAGAATTTTATGTCTCTCGATTAGATCGGACAATAATGAAACGCAAA
TACAATGAAGATGATGATGCAAGCAGTAGAATTGAAATGGCAGTCGAAATTCTTCAATCA
TTTGGAGATAAACTCATCGATATTTTATGTCATGACTCAACAGGTGGCCACGATGTTGTG
AAGATGCTGGCTTTGGCAAACGTAAATTTATTGCTGGATATAGACACAATGACTCAATTC
ATTAATTTTATATCAACACGTGGTTATTTGGCACACATCATTGATAGTTTATTAAAAACT
GATCATAAACTACAGCGCATTTTGGACAACAAACCTGAAAATTTGAAAGCACTTTATGTT
TACGAATCGAAAATGGCAATGCTTTCTCGTTTTGCTGCATCGTATGTTGGTGCAGAGCTT
TTATTAGAAAATCGTGTCATTGGTATACTTTCACAAATGAAAGTTTTTGATTTACATCCT
GATTTTCAAATAAGCAGCATGATGGACACTTCTGAGAATTCATTTATTCCTCCAATAAGT
CATCGTTATCAACAACTTTTGTTTCCTGCATTAAGTCTTTGTGATGTCATTTTAATCACT
CTCGGACCAGAGAATCAATCAGTGATTACTCAAATTACACACTTTTTATTATCGCATTCT
GATATCGTTGAAATAGTGCTACGAGCTGGAACACCATCTATATCATTAGGTCTTTTAAAA
GAATTATCAGGATTAACAGGGCTTATTGCGCGTGCTTCAAATCAAAGTATCAGCGAATTA
ATGGATCCTAGTGGAAACCATGATATCGGTGCACATTTATATCGTCTACAAAAATTAATG
ATGGCTCTATTTCCACGTTTTACTCTCACTAATCCTAATTTAAAAGAAGCTCAAAGAATT
TTCGGAAACATGCAGGCAGAAAATGAAGAAACTGAAAAACAAAGAGCAGAAAGAACTTTG
ACTTTCCTTCAAGTAGCAGCAAACATTTCACTCTATGCTAGAAATTGTATTGCTAATCAT
TCTGTAGATCATCGAACAACAAAAGTTTTATTTTCAATCAATACTGAGACAATTTCAAGT
GGCCATGAATCAGCAACTGCAACATCTTCACCTGATTTAAGTATCGTTGTTACACAGCTA
AAAAGTTGTGTTGAATTTTATAATCGAGAAAAATTAACTTATGATACTTTACTGCGTCAG
AAAAATAATTTACCAACAATAAGCTTGGATGTTAATATTGCACAACAGCAACAGCATTTA
AGTGATAAACTTGCTGCAAAAAATGAAGAGCTCAAACTTTGTGTATTTACACTGGAAAAT
TGCTTATACTTATTGTGGTCACACTTGGATTACTATATGTTGCGTGCCATAACACCTGCT
CTTCAATTAAATGGTTTCTCATATGGCATAGGAAACGATGTGACGCCAGAAGTGAGAACA
ATGAGAATAACAAATGAAGAAATTGCCAAACTGAAACATAATCTAGTGACTGTGTTTAGT
GAAACATTTTCAAAGCAACTATTAAGCACTCAAGAGACGCAAACATCAAATTTCATTGAC
GTCCTTTTGAGACGAATTAAACGTTTAATTCAATTTGTTCCCGTTGATTAA
>g13152.t1 Gene=g13152 Length=1956
MAEVTVDDLWTPFKQLYHQIQTFLVSNDKDVSLASFEALLRKNKQNFSSFLINPPKNEGS
RKEIMQGVTHGITLPTLGSTTLSKDLVDETIILSDMYNLNEFIALELLTTAQQQMPQYPG
LPRGLVAILLYYDGRKTLTSALKDLMQARLGVSWCTDNVSLDLIQLITTYTDSLVSEGIL
KKIIELLKSLDISKELDLLTKNRALGPPKHHRMVLDLFDEIRQNLASIIFNYAAQSGLPK
DVTLSLIQYLKKSKLSGARGEIGDVTTTLMMALFYALDLSIIHRREDGEEVVRRLPIIND
ESFFDDVMQELLINEDASDVTEKWECPGLRALAIFALGLACGTLKMAPQNLYPSAQQLVE
KDEELIDFAIHLKVFDFLNFTFLENSIIFRTEFFYRRLHILFTDFIEIMHTKVTELRARA
DETARTVQNYQQQGLEPPSNIDNNFGNLLCAIGKFYENDRLNLQLSLEYWGPMEHSGTYH
RTSSRSVCLFKFMRLAGDLLPQTLFIPYLKMLAGLSGNPQAARNAFNLLKQGNGTAGTAS
VSWDHFFASLARYYQTLRSEQHPGTDTVYRSRLYSRAISPQEIAGLQAVLQVIRIVATHD
EVARIALCEQPNYSPIPIMLGLVSCSIVIPLKANLVAALAALGRSSETAIQLWNALETSQ
IICTVPSVSNFGNRGIESELEEIEARNESYPLTKAVLDLLYTISSVIIPKNLGAGTRKTG
LDPYIVFIIETVFLKFYNRNYKDSQEKWEVAEKCLQICDMFMRIYETSPSDFPNSLGSND
ENSPPGFHIMLQLHTKSEFLRLILHLIDEACVMLDTYSPFAGKKQLENTIFYGLNIISMG
LEKQNIFFDAHFSANSPILMTGCSKLLLDVNPRTGRSDHMLNITKMVTYNSWLPRQALLA
IKILHYIVAQPNVNNQILGILTSNERIKMEIRQGFVECLENEVDIDSDPEASFLLEIEIK
EEIISLLNDTLPQSAPNIAHYLLGFDISKDIKLSNLQQPGILDFPSTCSKSLITILDQYL
EYVKSHTSVPEPRLKLIESAYGLVYSLCFNFKTSEVFMRFLRSSGDFLCRHVTELPFTND
NSPHVLNQMTALLKSVAIELKLTAEKNQLSHFSNMCKILGLLSNTNYSDNVQVELAHFQQ
TVIGMDAMQMSQKKNKASKMLCELLDCPEFELKPLDRPKWDHFDNSLMNNLFANCETIVS
SGVKLIDVKKVHAILREELNSVQSTIAAGQRQYILQDIESIMLYALQANRQKMVINSNVK
FLEAWSQVTEIIFSVQQPLIFSNEVKRNLIIEILEVLLKKVVPAQVAQIIPELSNLASST
VLLLLMNLRAASLKKIESHLSDSRDSTFFGNQTSISHDHTITSPTKSNSSHLKYIFRNII
EWIIISGSSGSQKLRMNLYAALLNFIYIIKGENDKDKNTIDEPKEEFYVSRLDRTIMKRK
YNEDDDASSRIEMAVEILQSFGDKLIDILCHDSTGGHDVVKMLALANVNLLLDIDTMTQF
INFISTRGYLAHIIDSLLKTDHKLQRILDNKPENLKALYVYESKMAMLSRFAASYVGAEL
LLENRVIGILSQMKVFDLHPDFQISSMMDTSENSFIPPISHRYQQLLFPALSLCDVILIT
LGPENQSVITQITHFLLSHSDIVEIVLRAGTPSISLGLLKELSGLTGLIARASNQSISEL
MDPSGNHDIGAHLYRLQKLMMALFPRFTLTNPNLKEAQRIFGNMQAENEETEKQRAERTL
TFLQVAANISLYARNCIANHSVDHRTTKVLFSINTETISSGHESATATSSPDLSIVVTQL
KSCVEFYNREKLTYDTLLRQKNNLPTISLDVNIAQQQQHLSDKLAAKNEELKLCVFTLEN
CLYLLWSHLDYYMLRAITPALQLNGFSYGIGNDVTPEVRTMRITNEEIAKLKHNLVTVFS
ETFSKQLLSTQETQTSNFIDVLLRRIKRLIQFVPVD
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g13152.t1 | Coils | Coil | Coil | 413 | 433 | - |
| 6 | g13152.t1 | Coils | Coil | Coil | 1714 | 1746 | - |
| 5 | g13152.t1 | Coils | Coil | Coil | 1955 | 1956 | - |
| 2 | g13152.t1 | PANTHER | PTHR31344:SF0 | NUCLEAR PORE COMPLEX PROTEIN NUP205 | 12 | 1876 | 5.3E-224 |
| 3 | g13152.t1 | PANTHER | PTHR31344 | NUCLEAR PORE COMPLEX PROTEIN NUP205 | 12 | 1876 | 5.3E-224 |
| 1 | g13152.t1 | Pfam | PF11894 | Nuclear pore complex scaffold, nucleoporins 186/192/205 | 10 | 1672 | 0.0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005643 | nuclear pore | CC |
KEGG
Orthology
- This transcript has been annotated with K14310 (nuclear pore complex protein Nup205)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
