General information for g13158.t8
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Homeobox protein extradenticle.
Parent gene
- The parent gene g13158 is located on chr_1: 28286048..28287831 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13158 | g13158.t8 | TTS | g13158.t8 | 28285238 | 28285238 |
| chr_1 | g13158 | g13158.t8 | isoform | g13158.t8 | 28286039 | 28287831 |
| chr_1 | g13158 | g13158.t8 | exon | g13158.t8.exon1 | 28286039 | 28286133 |
| chr_1 | g13158 | g13158.t8 | exon | g13158.t8.exon2 | 28286220 | 28286407 |
| chr_1 | g13158 | g13158.t8 | cds | g13158.t8.CDS1 | 28286382 | 28286407 |
| chr_1 | g13158 | g13158.t8 | exon | g13158.t8.exon3 | 28286521 | 28286953 |
| chr_1 | g13158 | g13158.t8 | cds | g13158.t8.CDS2 | 28286521 | 28286920 |
| chr_1 | g13158 | g13158.t8 | exon | g13158.t8.exon4 | 28287770 | 28287831 |
| chr_1 | g13158 | g13158.t8 | TSS | g13158.t8 | 28287918 | 28287918 |
Sequences
>g13158.t8 Gene=g13158 Length=778
TTTATATTATTTTGCGCAAAATAGTATTAAAGTGACACAAATCATAAAGAGTTCGTTAAA
AAGTGTCTAAAAGCAGCAACTTGCAGGCCGAATAAATGGAAGATCCAAATCGTATGATGG
CTCATGCAGCATCAAATCCTTCATACGCACAGCCATATGGTATGCCAAGTGATTCGCAAT
CGGTTGGTGATGACCCACGAAAGCAGGACATTGGTGAAATTCTTCAACAAATTATGAACA
TCACTGATCAATCACTTGATGAAGCACAAGCTCGAAAGCACACACTTAATTGTCATCGCA
TGAAGCCGGTTCTTTTTGCAGTGCTCTGTGAGATCAAGGAGAAAACAGTATTGTCATTAC
GCAATACTCAAGAGGAAGAACCTCCAGATCCTCAACTCATGCGTTTAGATAACATGCTTA
TTGCAGAAGGTGTTGCTGGTCCCGAAAAAGGCGGCGGTGCAGGAGCAGCAGCTTCTGCTT
CAGCGGCCGCATCAGTTATTCCCCAAAGAGGACTTTGGTGACATGGGCAGTGGTCAGGAC
AATGCTATTGAGCATTCTGACTACCGCGCCAAATTGGCTCAAATTCGTCAAATTTATCAT
CAAGAACTCGAAAAATATGAACAAGCATGCAGTGAATTTACAACACACGTTATGAATCTG
CTACGTGAACAGAGTAGAACACGCCCCATTACACCGAAAGAAATTGAACGAATGGTACAG
ATTATTCACAAGAAATTCAGCTCGATTCAAATGCAGTTAAAACAATCTACTTGCGAAG
>g13158.t8 Gene=g13158 Length=141
MEDPNRMMAHAASNPSYAQPYGMPSDSQSVGDDPRKQDIGEILQQIMNITDQSLDEAQAR
KHTLNCHRMKPVLFAVLCEIKEKTVLSLRNTQEEEPPDPQLMRLDNMLIAEGVAGPEKGG
GAGAAASASAAASVIPQRGLW
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g13158.t8 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 34 | - |
| 2 | g13158.t8 | PANTHER | PTHR11850:SF50 | PRE-B-CELL LEUKEMIA TRANSCRIPTION FACTOR 2 | 15 | 133 | 2.2E-58 |
| 3 | g13158.t8 | PANTHER | PTHR11850 | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 15 | 133 | 2.2E-58 |
| 1 | g13158.t8 | Pfam | PF03792 | PBC domain | 36 | 128 | 1.9E-40 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005634 | nucleus | CC |
| GO:0003700 | DNA-binding transcription factor activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
