General information for g1326.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative 39S ribosomal protein L32, mitochondrial.
Parent gene
- The parent gene g1326 is located on chr_3: 9704500..9705276 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1326 | g1326.t2 | isoform | g1326.t2 | 9700548 | 9705253 |
| chr_3 | g1326 | g1326.t2 | exon | g1326.t2.exon1 | 9700548 | 9700789 |
| chr_3 | g1326 | g1326.t2 | exon | g1326.t2.exon2 | 9704425 | 9704916 |
| chr_3 | g1326 | g1326.t2 | cds | g1326.t2.CDS1 | 9704500 | 9704916 |
| chr_3 | g1326 | g1326.t2 | exon | g1326.t2.exon3 | 9704971 | 9705104 |
| chr_3 | g1326 | g1326.t2 | cds | g1326.t2.CDS2 | 9704971 | 9705104 |
| chr_3 | g1326 | g1326.t2 | exon | g1326.t2.exon4 | 9705163 | 9705253 |
| chr_3 | g1326 | g1326.t2 | cds | g1326.t2.CDS3 | 9705163 | 9705253 |
| chr_3 | g1326 | g1326.t2 | TSS | g1326.t2 | 9705282 | 9705282 |
| chr_3 | g1326 | g1326.t2 | TTS | g1326.t2 | NA | NA |
Sequences
>g1326.t2 Gene=g1326 Length=959
ATGAATCGAGTAATTAATGAAATTTCAATAGTTTTAAGACAATTTGAGCAATTAATTCCT
GTAATTTTTGGTCGTCATCCTTTTCCACCAGAACCACTCGCTGTTTTAGCAACACAATCG
AATGCATTCGACACACAAAATAATTTAAAGCAGTCATTCTCACTCAAGGATTTAATTGGT
GATGGATTTCTCTTTGCTGTACCAGTGTTTCGAAGAACACTTGAGGTGAGAAAAACAAGA
AAAATTGGAATTCCTTATCGTGGTGGTCCAGAAGGGCTTAAAACTTTACGAGTTAAATAC
AATATTAAAGTTTGTGACACTTGTGGACATTATTATGAGAAAGTATGTCTCTGTCCAAAT
TGTTATCAACGCGTAAGGGAAGAAACTAAAGAAATTCAAGACAAAATAATGCAAAAACTG
AAAATTGATCCAGTTGAAAAAGATGTGATTGTGTTGTATGATGGTGAGAAAAAGCAAGAT
TCAGAGTTTTGGAACGGTCGAAGAATAATTGAAATGGAAAAGCCGAGACCACAATGGTTT
AGCAAAAATCTCATGCAGAAAAGTACACAGCCAAATGCTGAAAGTAAGGAAGTTGAAGTC
GTCGGCCCAACTATTCAAGTGAAACCATCGGATCTTGGCTAAAAATACTTTTTTTTGTCA
GCTTTATTCTGTAGTTTCATAATAGTTGTGGAAGCATTATCATAGTAAAGAATTGAAAAT
TGTATTGAGGTGTAAAAACCTCAATGAGTTGTATAAAATGATTACCTTAGACAATGATAT
GATTGATTGATGAATAATTAATGTGCATGGTCAAATAAAAAATGTTTTCAATGGTTTATG
GTGCGGAAATAGCCCTTCGATCACTCCTAATAAAGAGTATTCTTCAATTAATATCACACT
ATTCAAACTTTAGATGAGCTGCACTTATGCATGTTTCATAATCTTATTTCTTCAAAATT
>g1326.t2 Gene=g1326 Length=213
MNRVINEISIVLRQFEQLIPVIFGRHPFPPEPLAVLATQSNAFDTQNNLKQSFSLKDLIG
DGFLFAVPVFRRTLEVRKTRKIGIPYRGGPEGLKTLRVKYNIKVCDTCGHYYEKVCLCPN
CYQRVREETKEIQDKIMQKLKIDPVEKDVIVLYDGEKKQDSEFWNGRRIIEMEKPRPQWF
SKNLMQKSTQPNAESKEVEVVGPTIQVKPSDLG
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g1326.t2 | PANTHER | PTHR21026:SF2 | 39S RIBOSOMAL PROTEIN L32, MITOCHONDRIAL | 38 | 157 | 0 |
| g1326.t2 | PANTHER | PTHR21026 | 39S RIBOSOMAL PROTEIN L32, MITOCHONDRIAL | 38 | 157 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K02911 (large subunit ribosomal protein L32)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
