General information for g1327.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g1327 is located on chr_3: 9725163..9742728 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1327 | g1327.t2 | isoform | g1327.t2 | 9705689 | 9706669 |
| chr_3 | g1327 | g1327.t2 | exon | g1327.t2.exon1 | 9705689 | 9706669 |
| chr_3 | g1327 | g1327.t2 | cds | g1327.t2.CDS1 | 9706033 | 9706335 |
| chr_3 | g1327 | g1327.t2 | TTS | g1327.t2 | 9706664 | 9706664 |
| chr_3 | g1327 | g1327.t2 | TSS | g1327.t2 | NA | NA |
Sequences
>g1327.t2 Gene=g1327 Length=981
TTTTTTGAATTAAGGTGTTTATAAAAAGTTATAAATATACAGAAACAGTGAAATAACAGT
GTATAAATATGAAACAGAGCTAACAAACCTATAATTCTAAAGGATTCTAGATTTTTCTTT
ACATAATATGAAGATATTTCAAAATATCTGCAATAAAATATTGAATGTGAAAAGGGATTG
AAAAGAAAATGAGAAATAATCTAAGTATAGCGCAGAAAACATCGGTTGAGAAGCCCTGAA
ACATTAGTTCGTGTGTTTTGCTTTCATCCCTACCAAAAATTTTAAGTTTTGAAAACTTAA
GAAAATGTTATCGCGCTAGTCGTTTCAGAAACAATTTGATCATCATGAGCGTAAGTTCGA
GTCGGGCAGCAAGCGCCCGTTTGGTGCAAGAGAAATTGTGCAATTTGTTGTTTAATAATC
AACAAAAATGTGTTACGGTAAAAAGAAATTTCGGTTCAACTTATTTACCGCAAACGAATT
CATTTATGAAGATTTATCAAGGCACAAGTAAATTCGGATCATTCATTAATGGTATCAAGC
AAAGTCAGGTGAGTTGTCAATTGACACTAAAGCCACAAAATGTCATAAATTTTTGGAACA
CTCTACTACTTTCCTTCTCTCTCTCGAATTGCATAACAAGAAACTGAAAATTAAAAAAAT
GAAGCAAAAAATATAATTTCTGTCGTTTTGAAATTTATTCATGACTTTATAAAATTGCAC
GGTGATTTTTGTGAACAACAGTATATATGTGCATGATGTGTGTGATAAGAAATAAAATCA
AGTTAGACAATTGAAGGTGGAGAAAAAAAATGAAATAAAGGAATAAAGACACATATGACT
GACTGGCTAGTGGAAACAAGTGAAAAGAAAACAGTTACAAGTTTTAAATAAAAGAAAGAA
AATGAAATGATTTAAAAAGTTATGTACATTACTGCGAAATGGTTAAAAACACCAATCAAT
TAAATCAATTAGTAACAAAAA
>g1327.t2 Gene=g1327 Length=100
MSVSSSRAASARLVQEKLCNLLFNNQQKCVTVKRNFGSTYLPQTNSFMKIYQGTSKFGSF
INGIKQSQVSCQLTLKPQNVINFWNTLLLSFSLSNCITRN
Protein features from InterProScan
No InterPro annotations for this transcript.
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
